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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence
[TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTTCGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATGATTAAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACAGTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGAGACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATATACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATATATATATATGTATATGTATATATGTGTATGTATGTGTATATGTGTGTATTTGAATGTGTGTTATATGTACGTGCGTATATATGTGTATGCATACACATGTATATGCGTATACATATAAATAATACGCATATATAGGTATGTATACACGTATAAAAATATATTATATGTATATGTATATATATATATAATAATAATACATGTATATGCATATATATATATATACATATAGGTGGGTACGAACGAATAATGAAAGCGTATATTGACGTTAAATGCCCTTATCG]
[+] EMBL BI514007 [TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTTCGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATGATTAAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACAGTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGAGACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATATACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATATATAT ]
[+] EMBL BI514094 [TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTTCGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATGATTAAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACAGTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGAGACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATATACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATATA ]
[+] EMBL BI503225 [ AATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATGTACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATATATATGTATATATATATATATATATATGTATATGTATATATGTGTATGTATGTGTATATGTGTGTATTTGAATGTGTGTTATATGTACGTGCGTATATATGTGTATGCATACACATGTATATGCGTATACATATAAATAATACGCATATATAGGTATGTATACACGTATAAAAATATATTATATGTATATGTATATATATATATAATAATAATACATGTATATGCATATATATATATATACATATAGGTGGGTACGAACGAATAATGAAAGCGTATATTGACGTTAAATGCCCTTATCG]
consensusID : consensus_348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[GAAGGATCTGGAAAAACTTTGATACGATATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCATATATTTATTATAATAGGTATCAGCCAGTAGTAACCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGCGCGAAACTCTTCCGTGAATCGTTAAGATTCTCGAGAAAATCGGATCATGGAACAACGAGACGTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAATAGGGAAAGAAGAAAGNNCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATG]
[+] EMBL BI504545 [GAAGGATCTGGAAAAACTTTGATACGATATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCATATATTTATTATAATAGGTATCAGCCAGTAGTAACCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGCGCGAAACTCTTCCGTGAATCGTTAAGATTCTCGAGAAAATCGGATCATGGAACAACGAGACGTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAATAGGGAAAGAAGAAAGNNCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATG]
consensusID : consensus_348#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[CTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCGCATATATTTACTATAATAGGTATCAGCCAGTAGTAGCCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGTGCGAAACTCTTCCGTGAATCGTTAAGATCCTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAACAGGGAAAGAAGAAAGATTAGACGTACGTTGGTGTGAACACACGTTGTATAATAATAGAGTGATCTCGACTCGAG]
[+] EMBL BI515609 [CTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCGCATATATTTACTATAATAGGTATCAGCCAGTAGTAGCCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGTGCGAAACTCTTCCGTGAATCGTTAAGATCCTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAACAGGGAAAGAAGAAAGATTAGACGTACGTTGGTGTGAACACACGTTGTATAATAATAGAGTGATCTCGACTCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_348#1 ------------------------------------------------------------
consensus_348#2 ------------------------------------------------------------
consensus_348#0 TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTT 60
consensus_348#1 ----------------------GAAGGATCTGGAAAAACTTTGATACGATATTT-TAACG 37
consensus_348#2 ------------CTTCCTTGCAAACGTGGATCGCGATCGGTTATCACG-TATTT-TAACG 46
consensus_348#0 CGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATG 120
* * ** * * *** *
consensus_348#1 TTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGA-----TAGAATCAGTA 92
consensus_348#2 TTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGA-----TAGAATCAGTA 101
consensus_348#0 ATT-AAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACA 179
** * * *** ** ** * * ** * * * * * **** * *
consensus_348#1 ACCCTCCACCACCAAC--GTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGAT 150
consensus_348#2 ACCCTCCACCACCAAC--GTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGAT 159
consensus_348#0 GTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGA 239
* ** *** ** *** * * * * * * * * * *
consensus_348#1 TTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTA------ATCGTAGTA 204
consensus_348#2 TTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTA------ATCGTAGTA 213
consensus_348#0 GACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTA 299
* *** *** ** * * * **** * * *** * ** * **
consensus_348#1 GTTTCAGGAAGGGGGAGTAATAAGTTTT--CAAAAGGTTTACATTTAGAAGTTTGGA-AT 261
consensus_348#2 GTTTCAGGAAGGGGGAGTAATAAGTTTT--CAAAAGGTTTACATTTAGAAGTTTGGA-AT 270
consensus_348#0 ATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATAT 359
** ** * * ****** * * *** * ***** ** * * ** * **
consensus_348#1 TTAAT--CATATATTTATT-ATAATA--------GGTATCAGCCAGTAGTAACC------ 304
consensus_348#2 TTAATCGCATATATTTACT-ATAATA--------GGTATCAGCCAGTAGTAGCC------ 315
consensus_348#0 ACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAA 419
* ******* * * * *** * * *** * ** *
consensus_348#1 AGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGCGCGAAACTCTTCCGT 364
consensus_348#2 AGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGTGCGAAACTCTTCCGT 375
consensus_348#0 AAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATAT 479
* * **** ** ** * ** * * ** * ** * * * * *
consensus_348#1 GAAT-CGTTAAGATTCTCGAGAAAATCGGATCATGGAACAACGAGACGTGAAATATAAAA 423
consensus_348#2 GAAT-CGTTAAGATCCT--------------------------------GAAATATAAAA 402
consensus_348#0 ATATATATGTATATGTATATATGTGTATGTATGTGTATATGTGTGTATTTGAATGTGTGT 539
** * * ** *** *
consensus_348#1 TG-ATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCG---ATGAA-A 478
consensus_348#2 TG-ATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCG---ATGAA-A 457
consensus_348#0 TATATGTACGTGCGTATATATGTGTATGCATACACATGTATATGCGTATACATATAAATA 599
* ** * * ** * * * * * * * * ** * ** ** *
consensus_348#1 AGACAGAGAAATAGGGAAAGAAGAAAGNNCAGACGTACGTTG-GTGTGAACACACAT--- 534
consensus_348#2 AGACAGAGAAACAGGGAAAGAAGAAAGATTAGACGTACGTTG-GTGTGAACACACGT--- 513
consensus_348#0 ATACGCATATATAGGTATGTATACACGTATAAAAATATATTATATGTATATGTATATATA 659
* ** * * * *** * * * * * * ** ** *** * * *
consensus_348#1 TGTATAATAATAGAGTGATG---------------------------------------- 554
consensus_348#2 TGTATAATAATAGAGTGATCTCGACTCGAG------------------------------ 543
consensus_348#0 TATATAATAATAATAC-ATGTATATGCATATATATATATATACATATAGGTGGGTACGAA 718
* ********** **
consensus_348#1 -----------------------------------------
consensus_348#2 -----------------------------------------
consensus_348#0 CGAATAATGAAAGCGTATATTGACGTTAAATGCCCTTATCG 759
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |