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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 782 fasta sequence
[TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTGATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCATGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAACAAGCTGGTGGAGATATGTCAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAATATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTGTTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAGAAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAAACAATAATTTTTAGACGAGTAATTACTAAATTTAGAAATCAGTACCGCACGAAGCAGGACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAAT]
[+] EMBL BI503090 [TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTGATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCATGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAACAAGCTGGTGGAGATATGTCAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAATATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTATTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCG ]
[+] EMBL BI508332 [TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTGATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCATGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAACAAGCTGGTGGAGATATGTCAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAATATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTATTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGC ]
[+] EMBL BI510548 [ CAGTAATATCAATGCCGCGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTGTTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAGAAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAAACAATAATTTTTAGACGAGTAATTACTAAATTTAGAAATCAGTACCGCACGAAGCAGGACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAA ]
[+] EMBL BI513077 [ GAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTGTTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAGAAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAAACAATAATTTTTAGACGAGTAATTACTAAATTTAGAAATCAGTACCGCACGAAGCAGGACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAAT]
consensusID : consensus_354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[CGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAATAATTCAAGCTTTATGGTCCAGATCATGCAAAATAGAAACGAGCGCCCATCGCCAATTGTGTGCATTGCGTATCATCAATTAAGTATAATGACTGGTATTAAAGATCCAACTAAACAACCTGATTTAGAGAAAATAAAACAAGAGAATGAACAAATGAATGTTATTGTTAAAAGAAGTTTTATGGATATAAAAAATATGTATATGCAACATTTTTTTAAATTTTCTAAAGATATGGCAGAATCTTTCAGGTCAATATTAGATGACATAAAAGTTCGTATTGAAGAATTTCATGAACAGAATCAATCTATATTTGATCTATTTTCACTTTCACAACTACAAAAGTGGTCTCAATCCCAACGTGAACAATAATTTGAAGTATGAAAATATTGATGTTTTTTGATAGATATGTTTTTAAAATTTATAATATAAAATAAATAACTTGACCAAAATATATATTTACGTTCGCACATTCTTGATGAAATAAAATCATTATGTATATTTAAAATCGTAAAATTA]
[+] EMBL BI513772 [CGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAATAATTCAAGCTTTATGGTCCAGATCATGCAAAATAGAAACGAGCGCCCATCGCCAATTGTGTGCATTGCGTATCATCAATTAAGTATAATGACTGGTATTAAAGATCCAACTAAACAACCTGATTTAGAGAAAATAAAACAAGAGAATGAACAAATGAATGTTATTGTTAAAAGAAGTTTTATGGATATAAAAAATATGTATATGCAACATTTTTTTAAATTTTCTAAAGATATGGCAGAATCTTTCAGGTCAATATTAGATGACATAAAAGTTCGTATTGAAGAATTTCATGAACAGAATCAATCTATATTTGATCTATTTTCACTTTCACAACTACAAAAGTGGTCTCAATCCCAACGTGAACAATAATTTGAAGTATGAAAATATTGATGTTTTTTGATAGATATGTTTTTAAAATTTATAATATAAAATAAATAACTTGACCAAAATATATATTTACGTTCGCACATTCTTGATGAAATAAAATCATTATGTATATTTAAAATCGTAAAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_354#0 TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTG 60
consensus_354#1 ------------------------------------------------------------
consensus_354#0 ATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCA 120
consensus_354#1 ------------------------------------------------------------
consensus_354#0 TGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAA 180
consensus_354#1 -----------------------------------------------------------C 1
consensus_354#0 CAAGCTGGTGGAGATATGT-CAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAAT 239
consensus_354#1 GGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAATAATTCAAGCTTTATGGTCCAG 61
* * * * ***** * * * *** * **** * * *** *** *
consensus_354#0 ATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGAT-ACGAAAGAACAAG 298
consensus_354#1 ATCA-TGCAAAATA-GAAACGAGCGCCCATCGCCAATTGTGTGCATTGCGTATCATCAA- 118
**** *** * * *** * * * **** *** ** ** * * ***
consensus_354#0 ATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTC 358
consensus_354#1 -TTAAGTATAATGACTGGTATTAAAGATCCAACTAAACAACCTGATT-TAGAGAAAATAA 176
** * * ** * * * * * * * * * * * * * ** **
consensus_354#0 AACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAAT 418
consensus_354#1 AACAAGAGAATGAACAAATGAATGTTATTGTTAAA-AGAAGTTTTATGGATATAAAAAAT 235
*** * **** ******* * ** **** * *** *** * *****
consensus_354#0 TAAGATCTATTAAGATGTGTTA--TTTTCAAGATAATTTTGTTTAATTTTTATATTGAAA 476
consensus_354#1 ATGTATATGCAACATTTTTTTAAATTTTCTAAA-GATATGGCAGAATCTTTCAGGTCAAT 294
** * * * * *** ***** * * ** * * *** *** * **
consensus_354#0 TATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAA 536
consensus_354#1 ATTAGATGACATAAAAGTTCGTAT---TGAAGAATTTCATG--AACAGAATC-------A 342
* * * * * ** * * *** ** * **** *** **** * *
consensus_354#0 ATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAG 596
consensus_354#1 ATCTATA--TTTGATCTATTTTCACTTT-CACAACTACAAAAGTGGTCTCAATCCCAACG 399
** ** * *** * * ** *** * * * * *** * * * * * *
consensus_354#0 AAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAA 656
consensus_354#1 TGAACAATAATTTGAAGTATGAA-AATATTGATGTTTTTTGA-TAGATATGTTTTTAAAA 457
* ** ** * * ** * ** * * * ** ** * * * * ***
consensus_354#0 ACAATAATTTTTAGACGAGTAATT--ACTAAATTTAGAAATCAGTACCGCACGAAGCAGG 714
consensus_354#1 TTTATAATATA-AAATAAATAACTTGACCAAAATATATATTTACGTTCGCACATTCTTGA 516
***** * * * * *** * ** *** * * * * ***** *
consensus_354#0 ACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAA 774
consensus_354#1 TGAAATAAAATCATTATGTATA---TTTAAAATCGTAAAATTA----------------- 556
*** * * ** ** * * * ** ** * * *
consensus_354#0 TCAGTAAT 782
consensus_354#1 --------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |