These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 545 fasta sequence [ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGGTTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGCAGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCTTCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAAA] [+] EMBL BI512837 [ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGGTTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGCAGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCTTCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTataa ] [+] EMBL BI503022 [ GGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTAAAAAAAA ] [+] EMBL BI513986 [ ATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAAA] [+] EMBL BI514073 [ ATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAA ] consensusID : consensus_357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTATAATATTTCGAATAAATGACAATGTTCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTATATTAACCTCTTGCATAATCAATATGATTTAAATAAATGACTAAAATATTTTCGATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTATTATAATTGGTTATTGAAAAAAATGAAAAAAATTAAATCAAAATCATAAATGTAATATCTATTCAAATTTATATACAGTTTTTCTATTTCAAAAATTATCATTATTCGAGATTACAATAAATTGTTTCCTGCAATATAATAATGATAAATAAAATAAAATTTAAAAAAAAAAA] [-] EMBL BI513354 [TTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTATAATATTTCGAATAAATGACAATGTTCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTATATTAACCTCTTGCATAATCAATATGATTTAAATAAATGACTAAAATATTTTCGATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTATTATAATTGGTTATTGAAAAAAATGAAAAAAATTAAATCAAAATCATAAATGTAATATCTATTCAAATTTATATACAGTTTTTCTATTTCAAAAATTATCATTATTCGAGATTACAATAAATTGTTTCCTGCAATATAATAATGATAAATAAAATAAAATTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_357#0 ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGG 60 consensus_357#1 ----------------TTACTTTTAATTA----ACTTATAAACATAAAAAGTG-AATGAA 39 *** ** * * * * ** *** * * consensus_357#0 TTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGC 120 consensus_357#1 TTTCAATTCAACGTGATAT-TGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAAT 98 ** * * * * *** *** ** * * * * * *** ** * consensus_357#0 AGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCT 180 consensus_357#1 TGCGATTAAATGAGCATATAAACGTATAATATTTCG---------AATAAATGACAATGT 149 * * **** * * * * * * **** *** * * * * consensus_357#0 TCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCG 240 consensus_357#1 TCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTA 209 ** *** * **** * ** * * ** ** * *** ** ** * consensus_357#0 AGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGAT 300 consensus_357#1 TAT-TAACCTCTTGCATAATCAATATGATTTAAATAAATGACT------AAAATATTTTC 262 * ** ****** * ** * **** *** * ** * consensus_357#0 GCATGATCGAATATCATCTTTT-TACAATCGCAACCGTTATTAACATTAT--AATATAAA 357 consensus_357#1 GATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTAT 322 * * * * ** * **** ** *** * * **** **** ** ** * consensus_357#0 TAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTA 417 consensus_357#1 TATAATTG-GTTATTGAAAAAAATGA-AAAAAATTAAATCAAAATCATAAATGTAATATC 380 ** *** ***** * ** *** * ** ** * ** * *** * *** ** * * consensus_357#0 CTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATA 477 consensus_357#1 TATTCAA---ATTTATATACA------GTTTTTCTATTTCAA----AAATTATCATTATT 427 ** ** * ***** *** ** * ******* * * ** * ** consensus_357#0 TTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGT 537 consensus_357#1 CGAGATTACAATAAATTGTTTCCTGCAA-TATAATAATGAT-AAATAAA-ATA-AAATTT 483 ** * * *** **** ** ** ** *** *** **** * *** *** * consensus_357#0 NNNAAAAA--- 545 consensus_357#1 AAAAAAAAAAA 494 ***** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |