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Apis mellifera
cluster # 357 cluster # 357       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_357#0 length = 545 sequences # 4  
consensus_357#1 length = 494 sequences # 1  

consensusID : consensus_357#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 545
fasta sequence
                              [ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGGTTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGCAGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCTTCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAAA]

[+] EMBL BI512837             [ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGGTTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGCAGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCTTCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTataa    ]
[+] EMBL BI503022             [                                                                                                                                                                                                                                GGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTAAAAAAAA                                                                                                           ]
[+] EMBL BI513986             [                                                                                                                                                                                                                                                               ATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAAA]
[+] EMBL BI514073             [                                                                                                                                                                                                                                                               ATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAA ]


>consensus_357#0 ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGG TTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGC AGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCT TCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCG AGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGAT GCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAA TATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTT TTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTT TCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNN AAAAA



consensusID : consensus_357#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence
                              [TTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTATAATATTTCGAATAAATGACAATGTTCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTATATTAACCTCTTGCATAATCAATATGATTTAAATAAATGACTAAAATATTTTCGATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTATTATAATTGGTTATTGAAAAAAATGAAAAAAATTAAATCAAAATCATAAATGTAATATCTATTCAAATTTATATACAGTTTTTCTATTTCAAAAATTATCATTATTCGAGATTACAATAAATTGTTTCCTGCAATATAATAATGATAAATAAAATAAAATTTAAAAAAAAAAA]

[-] EMBL BI513354             [TTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTATAATATTTCGAATAAATGACAATGTTCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTATATTAACCTCTTGCATAATCAATATGATTTAAATAAATGACTAAAATATTTTCGATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTATTATAATTGGTTATTGAAAAAAATGAAAAAAATTAAATCAAAATCATAAATGTAATATCTATTCAAATTTATATACAGTTTTTCTATTTCAAAAATTATCATTATTCGAGATTACAATAAATTGTTTCCTGCAATATAATAATGATAAATAAAATAAAATTTAAAAAAAAAAA]


>consensus_357#1 TTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTG ATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAA CGTATAATATTTCGAATAAATGACAATGTTCGATTGAAAATTTTGTTTTCGAACATTATC TGAGCAAATTATCGATGAATTACCGATTATATTAACCTCTTGCATAATCAATATGATTTA AATAAATGACTAAAATATTTTCGATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATA TTTTAATTTTATTCAAAATTATTATAATTGGTTATTGAAAAAAATGAAAAAAATTAAATC AAAATCATAAATGTAATATCTATTCAAATTTATATACAGTTTTTCTATTTCAAAAATTAT CATTATTCGAGATTACAATAAATTGTTTCCTGCAATATAATAATGATAAATAAAATAAAA TTTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_357#0      ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGG 60
consensus_357#1      ----------------TTACTTTTAATTA----ACTTATAAACATAAAAAGTG-AATGAA 39
                                      *** **  *  *          *   * **   ***  * *  

consensus_357#0      TTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGC 120
consensus_357#1      TTTCAATTCAACGTGATAT-TGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAAT 98
                     ** * *    *  *  *** *** **        *  * *   *  *  *** **  *  

consensus_357#0      AGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCT 180
consensus_357#1      TGCGATTAAATGAGCATATAAACGTATAATATTTCG---------AATAAATGACAATGT 149
                      * *   **** *     *  *  * *  * ****          ***    * *  * *

consensus_357#0      TCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCG 240
consensus_357#1      TCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTA 209
                     **  ***  * **** * **    * *    **  **  *  *** ** **    *    

consensus_357#0      AGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGAT 300
consensus_357#1      TAT-TAACCTCTTGCATAATCAATATGATTTAAATAAATGACT------AAAATATTTTC 262
                       *  **        ******  *  **    *  **** ***      * **  *    

consensus_357#0      GCATGATCGAATATCATCTTTT-TACAATCGCAACCGTTATTAACATTAT--AATATAAA 357
consensus_357#1      GATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTAT 322
                     *  *  *    * ** * **** ** ***     *   * ****  ****  ** ** * 

consensus_357#0      TAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTA 417
consensus_357#1      TATAATTG-GTTATTGAAAAAAATGA-AAAAAATTAAATCAAAATCATAAATGTAATATC 380
                     **  ***   ***** * **  ***  * ** ** * ** * *** *  *** ** * * 

consensus_357#0      CTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATA 477
consensus_357#1      TATTCAA---ATTTATATACA------GTTTTTCTATTTCAA----AAATTATCATTATT 427
                       ** **   * ***** ***      **   *  *******    *  * **  * ** 

consensus_357#0      TTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGT 537
consensus_357#1      CGAGATTACAATAAATTGTTTCCTGCAA-TATAATAATGAT-AAATAAA-ATA-AAATTT 483
                          **   * * *** **** ** ** ** ***   *** **** *  *** ***  *

consensus_357#0      NNNAAAAA--- 545
consensus_357#1      AAAAAAAAAAA 494
                        *****   




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)