These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 729 fasta sequence [GATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGAAATTGGAAAAAGACACACCGACCCAAGGTTATCGAGATCCGAATTCGGCTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAGACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACAATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTACGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTATTATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCTATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAAATCTATAATT] [+] EMBL BI516234 [GATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGAAATTGGAAAAAG ACCGACCCAAGGTTATCGAGATCCGAATTCGGCTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAGACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACAATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGAT ] [+] EMBL BI511518 [ ATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGAAATTGGAAAAAGACACACCGACCCAAGGTTATCGAGATCCGAATTCGGCTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAGACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACAATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGA ] [-] EMBL BI516588 [ GCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTACGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTATTATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCTATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAAATCTATAATT] [+] EMBL BI511591 [ CGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTACGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTATTATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCTATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAAATCTATAATT] consensusID : consensus_358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [TTTTTTTTTTCCTTTTTTTTTCTTGCGAATTAAATTGTGTTTCGTTGGGACACCAGGAAAGGAGAATGCACGAGAGAAGTAGAAGAGAGGATATAGTTTATAGAAAAGAAGGGAAGAAATCGAAGCGCGAATAAATAATAGTCAGTGTCGGAGAAATTTTGCGCGAGAGTGAGTACGAAAGAAAGATAGCGTGGGAGAAAGAGAGCGAGAGAGGGAGAGGGTGAGATATTAAGAGAGGGATAAGAAGAGGGGTAATGGACAGTAAGAGAGCGTGAGGCCCAGCAGGGGTGCTCAACTCGGGTGAAGTGCGCCATGGGTCCCAATTGCGTGGTAATATAATTNNNATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGA] [+] EMBL BI513776 [TTTTTTTTTTCCTTTTTTTTTCTTGCGAATTAAATTGTGTTTCGTTGGGACACCAGGAAAGGAGAATGCACGAGAGAAGTAGAAGAGAGGATATAGTTTATAGAAAAGAAGGGAAGAAATCGAAGCGCGAATAAATAATAGTCAGTGTCGGAGAAATTTTGCGCGAGAGTGAGTACGAAAGAAAGATAGCGTGGGAGAAAGAGAGCGAGAGAGGGAGAGGGTGAGATATTAAGAGAGGGATAAGAAGAGGGGTAATGGACAGTAAGAGAGCGTGAGGCCCAGCAGGGGTGCTCAACTCGGGTGAAGTGCGCCATGGGTCCCAATTGCGTGGTAATATAATTNNNATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_358#0 GATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACA 60 consensus_358#1 --TTTTTTTTTTCCTTTTTTTTTCTTGCGAATTAAATTGTG-TTTCGTTGGGACACCAGG 57 **** *** * * ** * * ** * * ** *** * * * consensus_358#0 AATTGAAGAGGAAATTGGAAAAAGACACACCGACCCAAGGTTATCGAGATCCGAATTCGG 120 consensus_358#1 AAAGGAGAATGCACGAGAGAAGTAGAAGAGAGGATATAGTTTATAGAAAAGAAGGGAAGA 117 ** ** * * * * ** * * * ** **** ** * * consensus_358#0 CTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAG 180 consensus_358#1 ----------AATCGAAGCGCGAATAAATAATA-GTCAGTGTCGGAGAAATTTTGC---- 162 * ** * * ****** * * ** * * * * * * consensus_358#0 ACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACA 240 consensus_358#1 --GCGAGAGTGAGTACGAAAGAAAGATAGCGTGGGAGAAAGAGAGCGAGAGAGGGAGAGG 220 ***** *** ** ** * * * * *** * ** * * * * * * consensus_358#0 ATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGT 300 consensus_358#1 GTGAGATATTAAGA-------GAGGGATAAGAAGAGGGGTAATGGACAGTAAGAGAGCGT 273 *** * * ** * *** ** * * * * ** * *** consensus_358#0 GACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAAC 360 consensus_358#1 GAGGCCCAGCAGGGGTGCTCAAC-TCGGGTGAAGTGCGCCATGGGTCCCAATTGCGTGGT 332 ** * * * *** * *** ** * *** * ** ** ** consensus_358#0 AATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGAT 420 consensus_358#1 AAT-ATAATTNNNATTTTCAATTTATTGTATTGATTGA--GAAAAATTCGTGATGATTTT 389 *** * * ** ** *** ** ********* ** * consensus_358#0 G-TAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCAC 479 consensus_358#1 AATTACGCGTTACAAATTGAAGAGGA---------------------------------- 415 * * * * * * * *** * consensus_358#0 ATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTA 539 consensus_358#1 ------------------------------------------------------------ consensus_358#0 CGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTAT 599 consensus_358#1 ------------------------------------------------------------ consensus_358#0 TATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCT 659 consensus_358#1 ------------------------------------------------------------ consensus_358#0 ATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAA 719 consensus_358#1 ------------------------------------------------------------ consensus_358#0 ATCTATAATT 729 consensus_358#1 ---------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |