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Apis mellifera
cluster # 368 cluster # 368       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_368#0 length = 522 sequences # 3  
 consensus_368#1 length = 437 sequences # 1  
consensusID : consensus_368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 522
fasta sequence 
                              [ATCGACTTGTTTCTTCTTCGCGGCGGAAAAATCGAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACATTAATATTGAAAAAAAGAGAAAAAAATTTTCAATACTTAATAC]

[+] EMBL BI515646             [ATCGACTTGTTTCTTCTTCGCGGCGGAAAAATCGAAAGAGGCATTTTACCGCACCGTCTCACATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACATTAATATTGAAATTATGCGTAATATATTTTCAATACTTAATAC]
[+] EMBL BI514966             [                                 GAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATA                                                 ]
[+] EMBL BI512565             [                                                     CCGTCTCATATTCGAAGAAGNCTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACATTAATATTGAAAAAAAAAAAAAAAA                  ]




>consensus_368#0
ATCGACTTGTTTCTTCTTCGCGGCGGAAAAATCGAAAGAGGCATTTTACCGCACCGTCTC
ATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATG
TTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAG
GACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAA
GAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGA
CAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTA
AAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTG
CCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACAT
TAATATTGAAAAAAAGAGAAAAAAATTTTCAATACTTAATAC

consensusID : consensus_368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence 
                              [GAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGGTAAAAAAATAGCCATTTTTTTTTTATTATATTTTACTGTATATTATTTAATTTTGATAAATGATGAATTAAACCATTCACATAGATAAATAGCATAATGTTTGTCATTTACATTGATATAAAAGGGTTCTCCTTTATATTTATGAATTTGACTTGCGTAGCTTTTTTACT]

[+] EMBL BI508145             [GAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGGTAAAAAAATAGCCATTTTTTTTTTATTATATTTTACTGTATATTATTTAATTTTGATAAATGATGAATTAAACCATTCACATAGATAAATAGCATAATGTTTGTCATTTACATTGATATAAAAGGGTTCTCCTTTATATTTATGAATTTGACTTGCGTAGCTTTTTTACT]




>consensus_368#1
GAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGT
CAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAG
TTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATA
GGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATG
TATATGTTGGTATTGATCCCTCTAAGGTAAAAAAATAGCCATTTTTTTTTTATTATATTT
TACTGTATATTATTTAATTTTGATAAATGATGAATTAAACCATTCACATAGATAAATAGC
ATAATGTTTGTCATTTACATTGATATAAAAGGGTTCTCCTTTATATTTATGAATTTGACT
TGCGTAGCTTTTTTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_368#0      ATCGACTTGTTTCTTCTTCGCGGCGGAAAAATCGAAAGAGGCATTTTACCGCACCGTCTC 60
consensus_368#1      ---------------------------------GAAAGAGGCATTTTACCGCACCGTCTC 27
                                                      ***************************

consensus_368#0      ATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATG 120
consensus_368#1      ATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATG 87
                     ************************************************************

consensus_368#0      TTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAG 180
consensus_368#1      TTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAG 147
                     ************************************************************

consensus_368#0      GACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAA 240
consensus_368#1      GACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAA 207
                     ************************************************************

consensus_368#0      GAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGA 300
consensus_368#1      GAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGG 267
                     *********************************************************** 

consensus_368#0      CAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTA 360
consensus_368#1      TAAAAAAATAGCCATTTTTTTTTTATTATATTTTACTGTATATTATT--TAATTTTGATA 325
                      *   *       ***     *  ** *   *     * * ******   *       **

consensus_368#0      AAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTG 420
consensus_368#1      AATGATGAATTAAACCATTCA-CATAGATAAATAGCATAATGTTTGTCATTTA--CATTG 382
                     ** *  *  **    ****   **  *****     *  **  *    *** *     **

consensus_368#0      CCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACAT 480
consensus_368#1      ATATAAAAGGGTTCTCCTTTATATTTATGAATTTGACTTGCGTAGCTTTTTTACT----- 437
                       **  **   *  *   **  *  ***   **    *     *  ***  **       

consensus_368#0      TAATATTGAAAAAAAGAGAAAAAAATTTTCAATACTTAATAC 522
consensus_368#1      ------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)