Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 383 cluster # 383       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_383#0 length = 887 sequences # 3  
consensus_383#1 length = 205 sequences # 1  

consensusID : consensus_383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 887
fasta sequence
                              [CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATGCATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTTTTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAGAAGAAAAAAAGA-GGAAAGC-TTTCGGTCGAAAACGCGAATTT-AAAAAAAAAAAAGAGATAAGATAAAATTCCGAT-GTATGTATAA-ATAGATACACGGTATGGTTTCTGTTTAAC-TTTTTTTTTCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTCTCTATTTCTTTATCTTTCTCTC--TCTCTCTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGTCAATCAAACACTTTGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATTGTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC]

[+] EMBL BI512752             [CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATGCATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTTTTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAAAAGAAAAAAAGAGGGAAAGCTTTTCGGTCGAAAACGCGAATTTAAAAAAAAAAAAAGAGATAAGATAAAATTCCGATATTATGTATAATATAGATACACAGTATGGTTTCTGTTTAACTTTTTTTTTTCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTNNGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGAT                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI509101             [                                                                                                                                                                           ATCGTTAGAAGAAAAAAAGA GGAAAGC TTTCGGTCGAAAACGCGAATTT AAAAAAAAAAAAGAGATAAGATAAAATTCCGAT GTATATATAA ATATATACACGGTATGGTTTCTGTTTAAC TTTTTTTTTCTTTTTTTTTTCTTTTGATACATAATACGCGTGTATTGTATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTGTAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTTTCTATTTCTTTATCTTTCTCTCTTTCTCTCTCTCTCTCTCACTCGATCTTTTTTCCTTTTA                                                                                                                                                                                                                             ]
[-] EMBL BI504163             [                                                                                                                                                                                                                                                                                                                                                  TGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCNAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTCTCTATTTCTTTATCTTTCTCTC  TCTTTCTCTCTCTCTCACTCAATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGTCAATCAAACACTTTGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATTGTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC]


>consensus_383#0 CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATG CATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTT TTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAGA AGAAAAAAAGAGGAAAGCTTTCGGTCGAAAACGCGAATTTAAAAAAAAAAAAGAGATAAG ATAAAATTCCGATGTATGTATAAATAGATACACGGTATGGTTTCTGTTTAACTTTTTTTT TCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTT TTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTG GGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAA ATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGG CATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATT CTATCTCTCTATTTCTTTATCTTTCTCTCTCTCTCTCTCTCTCTCACTCGATCTTTTTTC CTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTG ATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGTCAATCAAACACTTTGATCATCAG AGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATTGTACAAAAGA ATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC



consensusID : consensus_383#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence
                              [TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTTTGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA]

[-] EMBL BI505530             [TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTTTGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA]


>consensus_383#1 TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGT CGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATCGATGACGTTTGCTCGTCCACGA TTAATCGTTTGTGTCGATCGTTCGATCAAACACTTTGATCATCAGAGGCATCACAAATTT ATTCATTTGATGATTATATTTTATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_383#0      CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATG 60
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      CATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTT 120
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      TTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAGA 180
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      AGAAAAAAAGAGGAAAGCTTTCGGTCGAAAACGCGAATTTAAAAAAAAAAAAGAGATAAG 240
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      ATAAAATTCCGATGTATGTATAAATAGATACACGGTATGGTTTCTGTTTAACTTTTTTTT 300
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      TCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTT 360
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      TTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTG 420
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      GGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAA 480
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      ATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGG 540
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      CATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATT 600
consensus_383#1      ------------------------------------------------------------
                                                                                 

consensus_383#0      CTATCTCTCTATTTCTTTATCTTTCTCTCTCTCTCTCTCTCTCTCACTCGATCTTTTTTC 660
consensus_383#1      -------------------------TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTC 35
                                              * * ***** *************************

consensus_383#0      CTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTG 720
consensus_383#1      CTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTG 95
                     ************************************************************

consensus_383#0      ATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGT----------CAATCAAACACTT 770
consensus_383#1      ATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTT 155
                     ** ****************************** ***          * ***********

consensus_383#0      TGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATT 830
consensus_383#1      TGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA---------- 205
                     *************************** **********************          

consensus_383#0      GTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC 887
consensus_383#1      ---------------------------------------------------------
                                                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)