These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 887 fasta sequence [CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATGCATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTTTTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAGAAGAAAAAAAGA-GGAAAGC-TTTCGGTCGAAAACGCGAATTT-AAAAAAAAAAAAGAGATAAGATAAAATTCCGAT-GTATGTATAA-ATAGATACACGGTATGGTTTCTGTTTAAC-TTTTTTTTTCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTCTCTATTTCTTTATCTTTCTCTC--TCTCTCTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGTCAATCAAACACTTTGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATTGTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC] [+] EMBL BI512752 [CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATGCATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTTTTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAAAAGAAAAAAAGAGGGAAAGCTTTTCGGTCGAAAACGCGAATTTAAAAAAAAAAAAAGAGATAAGATAAAATTCCGATATTATGTATAATATAGATACACAGTATGGTTTCTGTTTAACTTTTTTTTTTCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTNNGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGAT ] [+] EMBL BI509101 [ ATCGTTAGAAGAAAAAAAGA GGAAAGC TTTCGGTCGAAAACGCGAATTT AAAAAAAAAAAAGAGATAAGATAAAATTCCGAT GTATATATAA ATATATACACGGTATGGTTTCTGTTTAAC TTTTTTTTTCTTTTTTTTTTCTTTTGATACATAATACGCGTGTATTGTATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTGTAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTTTCTATTTCTTTATCTTTCTCTCTTTCTCTCTCTCTCTCTCACTCGATCTTTTTTCCTTTTA ] [-] EMBL BI504163 [ TGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCNAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTCTCTATTTCTTTATCTTTCTCTC TCTTTCTCTCTCTCTCACTCAATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGTCAATCAAACACTTTGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATTGTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC] consensusID : consensus_383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTTTGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA] [-] EMBL BI505530 [TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTTTGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_383#0 CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATG 60 consensus_383#1 ------------------------------------------------------------ consensus_383#0 CATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTT 120 consensus_383#1 ------------------------------------------------------------ consensus_383#0 TTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAGA 180 consensus_383#1 ------------------------------------------------------------ consensus_383#0 AGAAAAAAAGAGGAAAGCTTTCGGTCGAAAACGCGAATTTAAAAAAAAAAAAGAGATAAG 240 consensus_383#1 ------------------------------------------------------------ consensus_383#0 ATAAAATTCCGATGTATGTATAAATAGATACACGGTATGGTTTCTGTTTAACTTTTTTTT 300 consensus_383#1 ------------------------------------------------------------ consensus_383#0 TCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTT 360 consensus_383#1 ------------------------------------------------------------ consensus_383#0 TTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTG 420 consensus_383#1 ------------------------------------------------------------ consensus_383#0 GGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAA 480 consensus_383#1 ------------------------------------------------------------ consensus_383#0 ATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGG 540 consensus_383#1 ------------------------------------------------------------ consensus_383#0 CATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATT 600 consensus_383#1 ------------------------------------------------------------ consensus_383#0 CTATCTCTCTATTTCTTTATCTTTCTCTCTCTCTCTCTCTCTCTCACTCGATCTTTTTTC 660 consensus_383#1 -------------------------TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTC 35 * * ***** ************************* consensus_383#0 CTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTG 720 consensus_383#1 CTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTG 95 ************************************************************ consensus_383#0 ATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGT----------CAATCAAACACTT 770 consensus_383#1 ATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTT 155 ** ****************************** *** * *********** consensus_383#0 TGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATT 830 consensus_383#1 TGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA---------- 205 *************************** ********************** consensus_383#0 GTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC 887 consensus_383#1 --------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |