|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 887 fasta sequence
[CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATGCATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTTTTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAGAAGAAAAAAAGA-GGAAAGC-TTTCGGTCGAAAACGCGAATTT-AAAAAAAAAAAAGAGATAAGATAAAATTCCGAT-GTATGTATAA-ATAGATACACGGTATGGTTTCTGTTTAAC-TTTTTTTTTCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTCTCTATTTCTTTATCTTTCTCTC--TCTCTCTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGTCAATCAAACACTTTGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATTGTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC]
[+] EMBL BI512752 [CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATGCATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTTTTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAAAAGAAAAAAAGAGGGAAAGCTTTTCGGTCGAAAACGCGAATTTAAAAAAAAAAAAAGAGATAAGATAAAATTCCGATATTATGTATAATATAGATACACAGTATGGTTTCTGTTTAACTTTTTTTTTTCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTNNGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGAT ]
[+] EMBL BI509101 [ ATCGTTAGAAGAAAAAAAGA GGAAAGC TTTCGGTCGAAAACGCGAATTT AAAAAAAAAAAAGAGATAAGATAAAATTCCGAT GTATATATAA ATATATACACGGTATGGTTTCTGTTTAAC TTTTTTTTTCTTTTTTTTTTCTTTTGATACATAATACGCGTGTATTGTATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTGTAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTTTCTATTTCTTTATCTTTCTCTCTTTCTCTCTCTCTCTCTCACTCGATCTTTTTTCCTTTTA ]
[-] EMBL BI504163 [ TGTATTATATACATTCTTCTATTTCTTTTTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTGGGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCNAGGGGATGATAAATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGGCATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATTCTATCTCTCTATTTCTTTATCTTTCTCTC TCTTTCTCTCTCTCTCACTCAATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGTCAATCAAACACTTTGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATTGTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC]
consensusID : consensus_383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTTTGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA]
[-] EMBL BI505530 [TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTCCTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTGATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTTTGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_383#0 CTAACAGTTATAACTTATAATGTACTAATCAATCGAGTGAATGCCACTTTTCAACTGATG 60
consensus_383#1 ------------------------------------------------------------
consensus_383#0 CATCGCATTAAAGAGATCGGATGTAATAAAAAAAAAAATGGATGAATAGAAATTCTTTTT 120
consensus_383#1 ------------------------------------------------------------
consensus_383#0 TTTTTTTATTTGAACAACTTTAAACGATCGATACGCTTTTTTTTTTGCTTTATCGTAAGA 180
consensus_383#1 ------------------------------------------------------------
consensus_383#0 AGAAAAAAAGAGGAAAGCTTTCGGTCGAAAACGCGAATTTAAAAAAAAAAAAGAGATAAG 240
consensus_383#1 ------------------------------------------------------------
consensus_383#0 ATAAAATTCCGATGTATGTATAAATAGATACACGGTATGGTTTCTGTTTAACTTTTTTTT 300
consensus_383#1 ------------------------------------------------------------
consensus_383#0 TCTTTTCTTTTTCTTTTGATACATGATACGCGTGTATTATATACATTCTTCTATTTCTTT 360
consensus_383#1 ------------------------------------------------------------
consensus_383#0 TTCTGTCACTCTTGTGTTTCGCTTTATAAGCGTTTGTTGATCGATACGCCAAAGGCTGTG 420
consensus_383#1 ------------------------------------------------------------
consensus_383#0 GGTTTAATTTGTTCGATGCCTTTTGGTCAAGGGACTCAGGCTCATGCTAGGGGATGATAA 480
consensus_383#1 ------------------------------------------------------------
consensus_383#0 ATGATCGATGATCTAACAAGGTAACGGAGAATGGTGCACGAAGGTATAACACTCTGAGGG 540
consensus_383#1 ------------------------------------------------------------
consensus_383#0 CATTTTGATAATTTGGGTATTACACTATTAGAGCTTTATTATCTCAACTTTTAATATATT 600
consensus_383#1 ------------------------------------------------------------
consensus_383#0 CTATCTCTCTATTTCTTTATCTTTCTCTCTCTCTCTCTCTCTCTCACTCGATCTTTTTTC 660
consensus_383#1 -------------------------TTTTTCTCTTTCTCTCTCTCACTCGATCTTTTTTC 35
* * ***** *************************
consensus_383#0 CTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTG 720
consensus_383#1 CTTTTATCCTCTCTTGTTTCGAGGTCGAATATTTGCTCCAAAGATGGATTGTAAATCTTG 95
************************************************************
consensus_383#0 ATTGATGACGTTTGCTCGTCCACGATTAATCGTGTGT----------CAATCAAACACTT 770
consensus_383#1 ATCGATGACGTTTGCTCGTCCACGATTAATCGTTTGTGTCGATCGTTCGATCAAACACTT 155
** ****************************** *** * ***********
consensus_383#0 TGATCATCAGAGGCATCACAAATTTATACATTTGATGATTATATTTTATAAAAAAAAATT 830
consensus_383#1 TGATCATCAGAGGCATCACAAATTTATTCATTTGATGATTATATTTTATA---------- 205
*************************** **********************
consensus_383#0 GTACAAAAGAATCTCTTTAAAATGAAAATACATACGTGGAATGAATTACGAAAAATC 887
consensus_383#1 ---------------------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |