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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 704 fasta sequence
[GTTATGGCGGCGGTTACGGACAAGGCGGTTATGGCGGTGGCTATGATGGATACGGAGGAGGCTACGATTATTACGGCGGTGGGTACGGCGGCTATGGTGGTTACGACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAA]
[+] EMBL BI513376 [GTTATGGCGGCGGTTACGGACAAGGCGGTTATGGCGGTGGCTATGATGGATACGGAGGAGGCTACGATTATTACGGCGGTGGGTACGGCGGCTATGGTGGTTACGACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACANAGTGAAAAATAC ]
[+] EMBL BI512075 [ CTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAA]
[+] EMBL BI515891 [ GTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTGCCCTTTTGTACAAAGTGAAAAATAC ]
consensusID : consensus_404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[GACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAACATTATATGCTGATATAAATATAAATACAGCATAATGATTATTTCAAATGTATGGATGATTACATCGATGATATGCCTTACGATGAGATATTGTAACGTAATATTTTTGT]
[+] EMBL BI512504 [GACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAACATTATATGCTGATATAAATATAAATACAGCATAATGATTATTTCAAATGTATGGATGATTACATCGATGATATGCCTTACGATGAGATATTGTAACGTAATATTTTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_404#0 GTTATGGCGGCGGTTACGGACAAGGCGGTTATGGCGGTGGCTATGATGGATACGGAGGAG 60
consensus_404#1 ------------------------------------------------------------
consensus_404#0 GCTACGATTATTACGGCGGTGGGTACGGCGGCTATGGTGGTTACGACTACAGTGGATACG 120
consensus_404#1 --------------------------------------------GACTACAGTGGATACG 16
****************
consensus_404#0 ACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTG 180
consensus_404#1 ACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTG 76
************************************************************
consensus_404#0 CACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACC 240
consensus_404#1 CACGCGGTAAAGG----------------------------------------------- 89
*************
consensus_404#0 AAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGT 300
consensus_404#1 ------------------------------------------------------------
consensus_404#0 AACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTT 360
consensus_404#1 ---------TTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTT 140
***************************************************
consensus_404#0 TCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTC 420
consensus_404#1 TCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTC 200
************************************************************
consensus_404#0 ACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGA 480
consensus_404#1 ACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGA 260
************************************************************
consensus_404#0 CAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTC 540
consensus_404#1 CAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTC 320
************************************************************
consensus_404#0 TTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTC 600
consensus_404#1 TTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTC 380
************************************************************
consensus_404#0 TCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTC 660
consensus_404#1 TCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTC 440
************************************************************
consensus_404#0 AACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAA---------------- 704
consensus_404#1 AACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAACATTATATGCTGATAT 500
********************************************
consensus_404#0 ------------------------------------------------------------
consensus_404#1 AAATATAAATACAGCATAATGATTATTTCAAATGTATGGATGATTACATCGATGATATGC 560
consensus_404#0 ----------------------------------
consensus_404#1 CTTACGATGAGATATTGTAACGTAATATTTTTGT 594
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |