These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_42#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 559 fasta sequence [GGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTCCTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCACGAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC---TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATATAAAAAAAAATGCTTCTCGAATCATCAACGATAGAAAA] [+] EMBL BE844589 [GGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCACGAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATATAAAAATAAATGCTTCTCGAATCATCAACGATAGAAAA] [+] EMBL BI505344 [ tTTTTTTTTTTCTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCACGAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC TTTTTTT ] [+] EMBL BI509334 [ TTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC TTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAGAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATAT ] [+] EMBL BI506266 [ CGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTCTTTTTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATAAAAAAAA ] [+] EMBL BI504193 [ TAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAAaa ] [+] EMBL BI504055 [ TAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGNNAAAGTGTGAGGTGTGTGTCAGAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAAaa ] consensusID : consensus_42#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 434 fasta sequence [TTCACCGTAAAA--CCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA-CCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTACTTTTTTTCTTTTTAATTGTTTAGTAAAAAAAAAAA] [+] EMBL BI510269 [TTCACCGTAAAA CCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA CCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTACTTTTTTTCTTTTTAATTGTTTAGTAAAAAAAAAAA] [+] EMBL BI511630 [TTCACCGTAAAA CCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA CCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTACTTTT ] [+] EMBL BI505419 [ GTAAAACCCCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGACCCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAA ] [+] EMBL BI503624 [ ATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA CCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAAaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_42#0 ------------------------------------------------------------ consensus_42#1 TTCACCGTAAAACCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAA 60 consensus_42#0 ------------------------------------------------------------ consensus_42#1 GATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTA 120 consensus_42#0 ------------------------------------------------------------ consensus_42#1 AATGAGACCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTC 180 consensus_42#0 -GGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTT 59 consensus_42#1 AGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTT 240 *********************************************************** consensus_42#0 GTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACAC 119 consensus_42#1 GTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACAC 300 ************************************************************ consensus_42#0 ACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGC 179 consensus_42#1 ACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGC 360 ************************************************************ consensus_42#0 CATTTTCTTTTTTTCTTTTTTTTTCCTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCAC 239 consensus_42#1 CATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTT-ACTTTTTTTCTTTTTAATT--- 416 ************************ ************ ******************* consensus_42#0 GAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGAC 299 consensus_42#1 -------------GTTTAGTAAAAAAAAAAA----------------------------- 434 *** ** ** *** * consensus_42#0 GACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTT 359 consensus_42#1 ------------------------------------------------------------ consensus_42#0 CTTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTC 419 consensus_42#1 ------------------------------------------------------------ consensus_42#0 AAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAA 479 consensus_42#1 ------------------------------------------------------------ consensus_42#0 AATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATATAAAAAAAAATGCTTCTC 539 consensus_42#1 ------------------------------------------------------------ consensus_42#0 GAATCATCAACGATAGAAAA 559 consensus_42#1 -------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |