These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [AGTAACAATATAAAAAAAACCGTCCGACACGTAACCTGCTCTTGAGATATTGGTATTTCGAACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTACGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAAAAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAACCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTAAACAAGTACTGGGCTTAGCAGCAAAAGGATACAGAATCATATCGGCTGAACCGCCCGTGTACTGGAACGTTAAAGAATGGTGTGATGGATTCAGAAAACTTTTGGATTACATGGAATTAGATAAGGTGCATCTTTTCGGCGCTTCATTAGGTGGATTTCTGGCGCAAAAATTCACCGAAGTGAATGCTCATTGTCCTAGAGTAGTATCGTTGGTTTTATGTAACTCGTTCACGGACACGTCGGTGTTCAGTTACAATGATTCCGCGACGATCTTTTGGATTTTGCCATCGTTGGTATTAAAAAAGATGTTAATGGGAAACTT] [+] EMBL BI504293 [AGTAACAATATAAAAAAAACCGTCCGACACGTAACCTGCTCTTGAGATATTGGTATTTCGAACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTACGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAAAAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAACCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTAAACAAGTACTGGGCTTAGCAGCAAAAGGATACAGAATCATATCGGCTGAACCGCCCGTGTACTGGAACGTTAAAGAATGGTGTGATGGATTCAGAAAACTTTTGGATTACATGGAATTAGATAAGGTGCATCTTTTCGGCGCTTCATTAGGTGGATTTCTGGCGCAAAAATTCACCGAAGTGAATGCTCATTGTCCTAGAGTAGTATCGTTGGTTTTATGTAACTCGTTCACGGACACGTCGGTGTTCAGTTACAATGATTCCGCGACGATCTTTTGGATTTTGCCATCGTTGGTATTAAAAAAGATGTTAATGGGAAACTT] [+] EMBL BI509503 [ TGCTCTTGAGATATTGGTATTTCGAACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTACGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAAAAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAACCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTAAACAAGTACTGGGCTTAGCAGCAAAAGGATACA ] consensusID : consensus_421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence [TAGATTTAATCTAATATTGAATATATAATTATATTGGTATTTCGAACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTACGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAAAAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAACCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTAAACAAGTACTGGGCTTAGCAGCAAAAGGATACAGAATCATATCGGCTGAACCGCCCGTGTACTGGAACGTTAAAGAATGGTGTGATGGATTCAGAAAACTTTTGGATTACATGGAATTAGATAAGGTGCATCTTTTCGGCGCTTCATTAGGTTAGAACGTGGATTTCTGGCGCAAAAATTCACCGAAGTGAATGCTCATTGTCCTAGAGTAGTATCGNNGGTTTTATGTAACTCGTTCACGGACACGTCGGTGT] [+] EMBL BI505902 [TAGATTTAATCTAATATTGAATATATAATTATATTGGTATTTCGAACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTACGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAAAAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAACCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTAAACAAGTACTGGGCTTAGCAGCAAAAGGATACAGAATCATATCGGCTGAACCGCCCGTGTACTGGAACGTTAAAGAATGGTGTGATGGATTCAGAAAACTTTTGGATTACATGGAATTAGATAAGGTGCATCTTTTCGGCGCTTCATTAGGTTAGAACGTGGATTTCTGGCGCAAAAATTCACCGAAGTGAATGCTCATTGTCCTAGAGTAGTATCGNNGGTTTTATGTAACTCGTTCACGGACACGTCGGTGT] [+] EMBL BI506761 [TAGATTTAATCTAATATTGAATATATAATTATATTGGTATTTCGAACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTACGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAAAAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAACCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTAAACAAGTACTGGGCTTAGCAGCAAAAGGATACAGAATCATATCGGCTGAACCGCCCGTGTACTGGAACGTTAAAGAATGGTGTGATGGATTCAGAAAACTTTTGGATTACATGGAATTAGATAAGGTGCATCTTTTCGGCGCTTCATTAGGTTAGAACGTGGATTTCTGGCGCAAAAATTCACCGAAGTGAATGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_421#0 AGTAACAATATAAAAAAAACCGTCCGACACGTAACCTGCTCTTGAGATATTGGTATTTCG 60 consensus_421#1 -------------TAGATTTAATCTAATATTGAATATATAATT---ATATTGGTATTTCG 44 * * ** * * ** * ** ************** consensus_421#0 AACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTA 120 consensus_421#1 AACGTAAACAACGATAAATATTAGATATAATCGAGAACAAAATAAAAAAAATGTCGTGTA 104 ************************************************************ consensus_421#0 CGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAA 180 consensus_421#1 CGAGCGAGCTTTCTCGATCACAGGAATATCTCAGCTTTCGTAGTTCCGTCCCGCTTAGAA 164 ************************************************************ consensus_421#0 AAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAA 240 consensus_421#1 AAATCGTCGTTGACGCCGATGGTACTAAGGGATGGAAAGTATACGATTCTAGTCCAAAAA 224 ************************************************************ consensus_421#0 CCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTA 300 consensus_421#1 CCATTAAATGTCCGCTTATATGTCTTCCACCGGTCAGTGGGACAGCCGATATCTTTTTTA 284 ************************************************************ consensus_421#0 AACAAGTACTGGGCTTAGCAGCAAAAGGATACAGAATCATATCGGCTGAACCGCCCGTGT 360 consensus_421#1 AACAAGTACTGGGCTTAGCAGCAAAAGGATACAGAATCATATCGGCTGAACCGCCCGTGT 344 ************************************************************ consensus_421#0 ACTGGAACGTTAAAGAATGGTGTGATGGATTCAGAAAACTTTTGGATTACATGGAATTAG 420 consensus_421#1 ACTGGAACGTTAAAGAATGGTGTGATGGATTCAGAAAACTTTTGGATTACATGGAATTAG 404 ************************************************************ consensus_421#0 ATAAGGTGCATCTTTTCGGCGCTTCATTAGGT--------GGATTTCTGGCGCAAAAATT 472 consensus_421#1 ATAAGGTGCATCTTTTCGGCGCTTCATTAGGTTAGAACGTGGATTTCTGGCGCAAAAATT 464 ******************************** ******************** consensus_421#0 CACCGAAGTGAATGCTCATTGTCCTAGAGTAGTATCGTTGGTTTTATGTAACTCGTTCAC 532 consensus_421#1 CACCGAAGTGAATGCTCATTGTCCTAGAGTAGTATCGNNGGTTTTATGTAACTCGTTCAC 524 ************************************* ********************* consensus_421#0 GGACACGTCGGTGTTCAGTTACAATGATTCCGCGACGATCTTTTGGATTTTGCCATCGTT 592 consensus_421#1 GGACACGTCGGTGT---------------------------------------------- 538 ************** consensus_421#0 GGTATTAAAAAAGATGTTAATGGGAAACTT 622 consensus_421#1 ------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |