|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[TTCTCAAACGGAACTGGGCATTGAGTTGAAAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGAAAGTGAGGAAAATAGAGAAGGGAGTGCAAGTTTCGATGGAAGAGAAAAAGGATATCGGTAAACGTTCTCTACAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAGGAATGGTCAGATCATGGTTGTTGGTCCCTCAACCGTTAGTTATCATAGAGGACGTTTGTATAAATAAATTCGCCTCGGCGTACGGTATTGCCGGCGCTATTAACGGAATAATATCTATAGTGTGCGNNNCGATCGTTGGTAAGTAAGTAAAAATCCAATAGGCGATTTCCGTTCGAATAACCTCAACAACAATAACGCACGAGAGAGAGAGAGAGACACGTGCGCCTAGTAATAATAATAA]
[+] EMBL BI507030 [TTCTCAAACGGAACTGGGCATTGAGTTGAAAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGAAAGTGAGGAAAATAGAGAAGGGAGTGCAAGTTTCGATGGAAGAGAAAAAGGATATCGGTAAACGTTCTCTACAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAGGAATGGTCAGATCATGGTTGTTGGTCCCTCAACCGTTAGTTATCATAGAGGACGTTTGTATAAATAAATTCGCCTCGGCGTACGGTATTGCCGGCGCTATTAACGGAATAATATCTATAGTGTGCGNNNCGATCGTTGGTAAGTAAGTAAAAATCCAATAGGCGATTTCCGTTCGAATAACCTCAACAACAATAACGCACGAGAGAGAGAGAGAGACACGTGCGCCTAGTAATAATAATAA]
consensusID : consensus_426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[CCAAGTGATCATCGGCCTCGGTGGAATCGCGTATCCCATATGCATCGACAAAATGATGAAAATGTACGGGTTTCGAGGTAAGTGAAAAACGAAAAAAAAAAAATTATTCGCGATGTAAATATGGCGTAATACCGTGTGTTGGTGATTTGTGTGGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGACGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCGGATCGTCGTTACAGCGACTTTATAACAGCCCCTATAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAG]
[+] EMBL BI510470 [CCAAGTGATCATCGGCCTCGGTGGAATCGCGTATCCCATATGCATCGACAAAATGATGAAAATGTACGGGTTTCGAGGTAAGTGAAAAACGAAAAAAAAAAAATTATTCGCGATGTAAATATGGCGTAATACCGTGTGTTGGTGATTTGTGTGGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGACGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCGGATCGTCGTTACAGCGACTTTATAACAGCCCCTATAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAG]
consensusID : consensus_426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[CATCGACAAAATGATGAAAATGTACGGGTTTCGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGATGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCCGATCGTCGTTACAGCGACTTTATAACAGCCCCTGTAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTC]
[+] EMBL BI511524 [CATCGACAAAATGATGAAAATGTACGGGTTTCGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGATGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCCGATCGTCGTTACAGCGACTTTATAACAGCCCCTGTAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTC]
consensusID : consensus_426#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[GAACTGGGCATTGAGTTGAAAAAGTAACTAGTTTCGAGTAAAGTTACTACTTTAAGTGATTTACTTATTAAACTGCTCGAATAATGTTTATTTATCAACTAGTAAATATTAGAATTATTCTTTCTTTCATGTAGTTCGCGTGTATGGAAATTCATACGCTCATACGAAGAAATATATTTTATTTATCATTAAATTTATTTTATTTATATTTTTTTTTTTGTTAAAGACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGA]
[+] EMBL BI516391 [GAACTGGGCATTGAGTTGAAAAAGTAACTAGTTTCGAGTAAAGTTACTACTTTAAGTGATTTACTTATTAAACTGCTCGAATAATGTTTATTTATCAACTAGTAAATATTAGAATTATTCTTTCTTTCATGTAGTTCGCGTGTATGGAAATTCATACGCTCATACGAAGAAATATATTTTATTTATCATTAAATTTATTTTATTTATATTTTTTTTTTTGTTAAAGACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_426#0 TTCTCAAACGGAACTGGGCATTGAGTTGAAAAAACTCCAGCGAAAAGGGTAGCCTCGATA 60
consensus_426#3 ----------GAACTGGGCATTGAGTTGAAAAAGTAACTA-GTTTCGAGTAAAGTTACTA 49
consensus_426#1 ---------CCAAGTGATCATCGGCCTCGGTGGAATCGCGTATCCCATATGCATCGACAA 51
consensus_426#2 ------------------------------------------------------------
consensus_426#0 TCCGAGATCGAAGACAGAATTTACAA-TCGAATGAAATCTAAATCGATGCGTGAATTGTT 119
consensus_426#3 CTTTAAGTGATTTACTTATTAAACTGCTCGAATAATGTTTA--TTTAT---CAACTAGTA 104
consensus_426#1 AATGATGAAAATGTACGGGTTTCGAGGTAAGTGAAAAACGAAAAAAAA---AAAATTATT 108
consensus_426#2 ------------------------------------------------------------
consensus_426#0 GACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGG 179
consensus_426#3 AATATTAGAATTATTC---TTTCTTTCATGTAGTTCG-CGTGTATGGAAAT-----TCAT 155
consensus_426#1 CGCGATGTAAATATGGCGTAATACCGTGTGTTGGTGA-TTTGTGTGGAGGGACCGCGTTG 167
consensus_426#2 -----------CATCG-ACAAAATGATGAAAATGT-A-CGGGTTTCGAGGGACCGCGTTG 46
** * * * *
consensus_426#0 AAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGAAAGTGAGGAAAATAGAGAA 239
consensus_426#3 ACGCTCA-----TACGAAGAAATATATTTTATTTATCATTAAATTTATTTTATTTATA-- 208
consensus_426#1 ATGACGGGCGC-CATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGA 226
consensus_426#2 ATGACGGGCGC-CATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGA 105
* * * * * * * * *
consensus_426#0 GGGAGTGCAAGTTTCGATGGAAGAGAAAAAGGATATCGGTAAACGTTCTCTACAGTTACT 299
consensus_426#3 -----TTTTTTTTTTTGTTAAAGACTCCAGCGAAAAGGGTAGCCTCGATATCCGAG-ATC 262
consensus_426#1 GTGGCACGCGAGGAAGCCGGAAGACGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTG 286
consensus_426#2 GTGGCACGCGAGGAAGCCGGAAGATGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTG 165
**** * * *
consensus_426#0 TAA--TGTACAATGAAACGTTGG-TCGGCATCTTTGTGATGATAACGATTATAGGAATGG 356
consensus_426#3 GAA--GACAGAATTTACAATCGA-ATGAAATCT--------AAATCGATGCGTGAATTGT 311
consensus_426#1 GAAATTGCGTGGTGTGATACCGGCGTCGGATCGTCGT---TACAGCGACTTTATAACAGC 343
consensus_426#2 GAAATTGCGTGGTGTGATACCGGCGTCCGATCGTCGT---TACAGCGACTTTATAACAGC 222
** * * *** * * *** * *
consensus_426#0 TCAGATCATGGTTGTTGGTCCCTCAACCGTTAGTTATCATAGAGGACGTTTGTATAAATA 416
consensus_426#3 TGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAA-----TTTGGTGACAGG 366
consensus_426#1 CCCTATAAAAACGAGATGCAGCA-GCTTAACGAGCCTCAAGGACGA-GAGTGGAAAACAG 401
consensus_426#2 CCCTGTAAAAACGAGATGCAGCA-GCTTAACGAGCCTCAAGGACGA-GAGTGGAAAACAG 280
* * * * * ** *
consensus_426#0 AATTCGCCTCGGCGTACGGTATTGCCGGCGCTATTAACGGAATAATATCTATAGTGTGCG 476
consensus_426#3 GATCGGA---AGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGA---------- 413
consensus_426#1 GTTCCGCTTTTGATTGAAACGTTGAAAGTTACTTAATGTACAATGAAACGTTGGTCGGCA 461
consensus_426#2 GTTCCGCTTTTGATTGAAACGTTGAAAACTCC--AGCGAAAAGGGTAGCCTCGATATCCG 338
* * * * * *
consensus_426#0 NNNCGATCGTTGGTAAGTAAGTAAAAATCCAATAGGCGATTTCCGTTCGAATAACCTCAA 536
consensus_426#3 ------------------------------------------------------------
consensus_426#1 TCTTTGTGATGATAACGATTATAG------------------------------------ 485
consensus_426#2 AGATCG--AAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGAC 396
consensus_426#0 CAACAATAACGCACGAGAGAGAGAGAGAGACACGTGCGCCTAGTAATAATAATAA----- 591
consensus_426#3 ------------------------------------------------------------
consensus_426#1 ------------------------------------------------------------
consensus_426#2 GCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAG 456
consensus_426#0 ---------------------------
consensus_426#3 ---------------------------
consensus_426#1 ---------------------------
consensus_426#2 TCTAGGGGACACCAGGCAATATCACTC 483
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |