These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence [TCTCTTGACTTTCTTGGCTAGCTGCCTTCTTGTCCTTCGTCTTTCCTTTAGCAGGAGTTGCTGGCTTCGGTTTTGGCTCAAGACTCGGACTCCAATACAATTTTACCGATGTTTTTACGGTCGTGCATCTTCTGCATAGCCTCCGGGACGTCTTCCAAAGCCCATGTCGAGTCCACCACAGGCTTTATTTTACCCTCGTTCCATAAAGCGAATACCCGTTCCACTGCTCGTCTCACAAATGCATGACTTCCATGCTGATACATCAAATGACGCAAATTCAACCCAGACAAGGTTTTATTCTCGTCGAACAGTTTAATGGGAGATACTTTGTCCACTTGCCACCATGATCGTGCTGCTGAGAAGAAGCTCTTAGTTTCGCCAGTGACAACATTACTAGATCCATAAAGAATATATTTTCCCATAGGTTTTAGCAAAGCATATCCTTTGTTGCATTCTTCACCACAAAGGCAATCCAAGACGATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCCAAGATGTGATCAATGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACACTCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCAGACCGCAGCAGGCGCAGCGGACCTTCGTAATCCTATTATGCAGGCTAAAGACGGAAAAAGCATGGTCTGAAGTCTTTTCATCGCACGATCGCGAAAAAACAGCCCAGAACAGGACACAAGATGGGAAAAAAA] [+] EMBL BQ103809 [TCTCTTGACTTTCTTGGCTAGCTGCCTTCTTGTCCTTCGTCTTTCCTTTAGCAGGAGTTGCTGGCTTCGGTTTTGGCTCAAGACTCGGACTCCAATACAATTTTACCGATGTTTTTACGGTCGTGCATCTTCTGCATAGCCTCCGGGACGTCTTCCAAAGCCCATGTCGAGTCCACCACAGGCTTTATTTTACCCTCGTTCCATAAAGCGAATACCCGTTCCACTGCTCGTCTCACAAATGCATGACTTCCATGCTGATACATCAAATGACGCAAATTCAACCCAGACAAGGTTTTATTCTCGTCGAACAGTTTAATGGGAGATACTTTGTCCACTTGCCACCATGATCGTGCTGCTGAGAAGAAGCTCTTAGTTTCGCCAGTGACAACATTACTAGATCCATAAAGAATATATTTTCCCATAGGTTTTAGCAAAGCATATCCTTTGTTGCATTCTTCACCACAAAGGCAATCCAAGACGATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCCAAGATGTGATCAATGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACACTCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCACACCCCCGCCGGCGCTGTGG ] [+] EMBL BI508011 [ TCTTCACCACAAAGGCAATCCAAGACGATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCCAAGATGTGATCAATGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACACTCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCTGTCCGTATCACGTTCACCAAACCTTCGTAATCCTATTATGCAGGCTAAAGACGGAAAAAGCATGGTCTGAAGTCTTTTCATCGCACGATCGCGAAAAAACAGCCCAGAACAGGACACAAGATGGGAAAAAAA] consensusID : consensus_428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 496 fasta sequence [GGAGAATGGCGAAGAGAAACCCACGCCAGAACCAAAGGATATGCGGGCTATAGTACTGAACGGTTTCGGCGGACTGAAAAGTGTCAAGGCTTTGAGGAAGCCTGAGCCCACCCTCTCCGAAGGAGAAGTTCTTATCCGAGTCAAAGCATGTGGACTAAATTTCCAAGATTTGATGGCGAGGCAGGGTGCTATTGATTCCCCACCAAAAACTCCTTTCATTATGGGATCCGAGTGCGCAGGTGATATCGAGCAAGTCGGCGAGGGCGTGGAGAACTTTAAAGTGGGCGATCGAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGAGCTTGTCGCTGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGAGCTACCTCGATGCAGCGGCGATCACGATGAACTATACTGTTGCTTACATTCTGTTGTTCGAACTGGCTAATTTAACGCCCGGAAAGAATCTGTTACTCCACAGCGCCGGCGGGGGTGTG] [+] EMBL BI516046 [GGAGAATGGCGAAGAGAAACCCACGCCAGAACCAAAGGATATGCGGGCTATAGTACTGAACGGTTTCGGCGGACTGAAAAGTGTCAAGGCTTTGAGGAAGCCTGAGCCCACCCTCTCCGAAGGAGAAGTTCTTATCCGAGTCAAAGCATGTGGACTAAATTTCCAAGATTTGATGGCGAGGCAGGGTGCTATTGATTCCCCACCAAAAACTCCTTTCATTATGGGATCCGAGTGCGCAGGTGATATCGAGCAAGTCGGCGAGGGCGTGGAGAACTTTAAAGTGGGCGATCTAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGAGCTTGTCGCTGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGAGCTACCTCGATGCAGCGGCGATC ] [+] EMBL BI515767 [ ACCCTCTCCGAAGGAGAAGTTCTTATCCGAGTCAAAGCATGTGGACTAAATTTCCAAGATTTGATGGCGAGGCAGGGTGCTATTGATTCCCCACCAAAAACTCCTTTCATTATGGGATCCGAGTGCGCAGGTGATATCGAGCAAGTCGGCGAGGGCGTGGAGAACTTTAAAGTGGGCGATCGAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGAGCTTGTCGCTGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGAGCTACCTCGATGCAGCGGCGATCACGATGAACTATACTGTTGCTTACATTCTGTTGTTCGAACTGGCTAATTTAACGCCCGGAAAGAATCTGTTACTCCACAGCGCCGGCGGGGGTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_428#0 TCTCTTGACTTTCTTGGCTAGCTGCCTTCTTGTCCTTCGTCTTTCCTTTAGCAGGAGTTG 60 consensus_428#1 ------------------------------------------------------------ consensus_428#0 CTGGCTTCGGTTTTGGCTCAAGACTCGGACTCCAATACAATTTTACCGATGTTTTTACGG 120 consensus_428#1 ------------------------------------------------------------ consensus_428#0 TCGTGCATCTTCTGCATAGCCTCCGGGACGTCTTCCAAAGCCCATGTCGAGTCCACCACA 180 consensus_428#1 ------------------------------------------------------------ consensus_428#0 GGCTTTATTTTACCCTCGTTCCATAAAGCGAATACCCGTTCCACTGCTCGTCTCACAAAT 240 consensus_428#1 -------------------------------------------------GGAGAATGGCG 11 * * consensus_428#0 GCATGACTTCCATGCTGATACATCAAATGACGCAAATTCAACCCAGACAAGGTTTTATTC 300 consensus_428#1 AAGAGAAACCCACGCCAGAACCAAAGGATATGCGGGCTATAGTACTGAACGGTTTCGG-C 70 ** *** ** ** * * ** * * * ***** * consensus_428#0 TCGTCGAACAGTTTAATGGGAGATACTTTGTCCACTTGCCACCATGATCGTGCTGCTGAG 360 consensus_428#1 GGACTGAAAAGTGTCA----AGGCTTTGAGGAAGCCTGAGCCCACCCTC----TCCGAAG 122 *** *** * * ** * * * ** *** ** * * ** consensus_428#0 AAGAAGCTCTTAGTTTCGCCAGTGACAACATTACTAGATCCATAAAGAATATATTTTCCC 420 consensus_428#1 GAGAAGTTCTTA--TCCG--AGTCAAAGCAT--GTGGAC---TAAA--------TTTCCA 165 ***** ***** * ** *** * * *** * ** **** ***** consensus_428#0 ATAGGTTTTAGCAAAGCATATCCTTTGTTGCATTCTTCACCACAAAGGCAATCCAAGACG 480 consensus_428#1 AGATTTGATGGCGAGGCAGGGTGCT-ATTG-ATTCCCCACCAAAAACTCCTTTCATTATG 223 * * * * ** * *** * *** **** ***** *** * * ** * * consensus_428#0 ATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCC 540 consensus_428#1 GGATCCGAGTGCGCAGGTGATATCGAGCAAG--TCG--GCGAGGGCGTGGAGAACTTTAA 279 **** * ***** *** * *** ** * * * * ** consensus_428#0 AAGATGTGATCAA-TGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACAC 599 consensus_428#1 AGTGGGCGATCGAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGA---GCTTGTCGC 336 * * **** * **** * ** ** * **** ** *** * * consensus_428#0 TCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCAGACC 659 consensus_428#1 TGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGA--GCTACCT---CGATGCA 391 * * * * *** * * *** ** ** *** * * * consensus_428#0 GCAGCAGGCGCAGCGGACCTTCGTAATCCTATTATGCAG--GCTAAAGACGGAAAAAGCA 717 consensus_428#1 GCGGCGATCACGATGAACTATACTGTTGCTTACATTCTGTTGTTCGAACTGGCTAATTTA 451 ** ** * * * ** * * * ** ** * * * * * ** ** * consensus_428#0 TGGTCTGAAGTCTTTTCATCGCACGATCGCGAAAAAACAGCCCAGAACAGGACACAAGAT 777 consensus_428#1 ACGCCCGGAAAGAATCTGTTACTCCACAGCGCCGGCGGGGGTGTG--------------- 496 * * * * * * * * * *** * * consensus_428#0 GGGAAAAAAA 787 consensus_428#1 ---------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |