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Apis mellifera
cluster # 428 cluster # 428       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_428#0 length = 787 sequences # 2  
consensus_428#1 length = 496 sequences # 2  

consensusID : consensus_428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 787
fasta sequence
                              [TCTCTTGACTTTCTTGGCTAGCTGCCTTCTTGTCCTTCGTCTTTCCTTTAGCAGGAGTTGCTGGCTTCGGTTTTGGCTCAAGACTCGGACTCCAATACAATTTTACCGATGTTTTTACGGTCGTGCATCTTCTGCATAGCCTCCGGGACGTCTTCCAAAGCCCATGTCGAGTCCACCACAGGCTTTATTTTACCCTCGTTCCATAAAGCGAATACCCGTTCCACTGCTCGTCTCACAAATGCATGACTTCCATGCTGATACATCAAATGACGCAAATTCAACCCAGACAAGGTTTTATTCTCGTCGAACAGTTTAATGGGAGATACTTTGTCCACTTGCCACCATGATCGTGCTGCTGAGAAGAAGCTCTTAGTTTCGCCAGTGACAACATTACTAGATCCATAAAGAATATATTTTCCCATAGGTTTTAGCAAAGCATATCCTTTGTTGCATTCTTCACCACAAAGGCAATCCAAGACGATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCCAAGATGTGATCAATGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACACTCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCAGACCGCAGCAGGCGCAGCGGACCTTCGTAATCCTATTATGCAGGCTAAAGACGGAAAAAGCATGGTCTGAAGTCTTTTCATCGCACGATCGCGAAAAAACAGCCCAGAACAGGACACAAGATGGGAAAAAAA]

[+] EMBL BQ103809             [TCTCTTGACTTTCTTGGCTAGCTGCCTTCTTGTCCTTCGTCTTTCCTTTAGCAGGAGTTGCTGGCTTCGGTTTTGGCTCAAGACTCGGACTCCAATACAATTTTACCGATGTTTTTACGGTCGTGCATCTTCTGCATAGCCTCCGGGACGTCTTCCAAAGCCCATGTCGAGTCCACCACAGGCTTTATTTTACCCTCGTTCCATAAAGCGAATACCCGTTCCACTGCTCGTCTCACAAATGCATGACTTCCATGCTGATACATCAAATGACGCAAATTCAACCCAGACAAGGTTTTATTCTCGTCGAACAGTTTAATGGGAGATACTTTGTCCACTTGCCACCATGATCGTGCTGCTGAGAAGAAGCTCTTAGTTTCGCCAGTGACAACATTACTAGATCCATAAAGAATATATTTTCCCATAGGTTTTAGCAAAGCATATCCTTTGTTGCATTCTTCACCACAAAGGCAATCCAAGACGATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCCAAGATGTGATCAATGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACACTCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCACACCCCCGCCGGCGCTGTGG                                                                                                                ]
[+] EMBL BI508011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCTTCACCACAAAGGCAATCCAAGACGATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCCAAGATGTGATCAATGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACACTCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCTGTCCGTATCACGTTCACCAAACCTTCGTAATCCTATTATGCAGGCTAAAGACGGAAAAAGCATGGTCTGAAGTCTTTTCATCGCACGATCGCGAAAAAACAGCCCAGAACAGGACACAAGATGGGAAAAAAA]


>consensus_428#0 TCTCTTGACTTTCTTGGCTAGCTGCCTTCTTGTCCTTCGTCTTTCCTTTAGCAGGAGTTG CTGGCTTCGGTTTTGGCTCAAGACTCGGACTCCAATACAATTTTACCGATGTTTTTACGG TCGTGCATCTTCTGCATAGCCTCCGGGACGTCTTCCAAAGCCCATGTCGAGTCCACCACA GGCTTTATTTTACCCTCGTTCCATAAAGCGAATACCCGTTCCACTGCTCGTCTCACAAAT GCATGACTTCCATGCTGATACATCAAATGACGCAAATTCAACCCAGACAAGGTTTTATTC TCGTCGAACAGTTTAATGGGAGATACTTTGTCCACTTGCCACCATGATCGTGCTGCTGAG AAGAAGCTCTTAGTTTCGCCAGTGACAACATTACTAGATCCATAAAGAATATATTTTCCC ATAGGTTTTAGCAAAGCATATCCTTTGTTGCATTCTTCACCACAAAGGCAATCCAAGACG ATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCC AAGATGTGATCAATGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACACT CCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCAGACCG CAGCAGGCGCAGCGGACCTTCGTAATCCTATTATGCAGGCTAAAGACGGAAAAAGCATGG TCTGAAGTCTTTTCATCGCACGATCGCGAAAAAACAGCCCAGAACAGGACACAAGATGGG AAAAAAA



consensusID : consensus_428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 496
fasta sequence
                              [GGAGAATGGCGAAGAGAAACCCACGCCAGAACCAAAGGATATGCGGGCTATAGTACTGAACGGTTTCGGCGGACTGAAAAGTGTCAAGGCTTTGAGGAAGCCTGAGCCCACCCTCTCCGAAGGAGAAGTTCTTATCCGAGTCAAAGCATGTGGACTAAATTTCCAAGATTTGATGGCGAGGCAGGGTGCTATTGATTCCCCACCAAAAACTCCTTTCATTATGGGATCCGAGTGCGCAGGTGATATCGAGCAAGTCGGCGAGGGCGTGGAGAACTTTAAAGTGGGCGATCGAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGAGCTTGTCGCTGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGAGCTACCTCGATGCAGCGGCGATCACGATGAACTATACTGTTGCTTACATTCTGTTGTTCGAACTGGCTAATTTAACGCCCGGAAAGAATCTGTTACTCCACAGCGCCGGCGGGGGTGTG]

[+] EMBL BI516046             [GGAGAATGGCGAAGAGAAACCCACGCCAGAACCAAAGGATATGCGGGCTATAGTACTGAACGGTTTCGGCGGACTGAAAAGTGTCAAGGCTTTGAGGAAGCCTGAGCCCACCCTCTCCGAAGGAGAAGTTCTTATCCGAGTCAAAGCATGTGGACTAAATTTCCAAGATTTGATGGCGAGGCAGGGTGCTATTGATTCCCCACCAAAAACTCCTTTCATTATGGGATCCGAGTGCGCAGGTGATATCGAGCAAGTCGGCGAGGGCGTGGAGAACTTTAAAGTGGGCGATCTAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGAGCTTGTCGCTGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGAGCTACCTCGATGCAGCGGCGATC                                                                                                ]
[+] EMBL BI515767             [                                                                                                             ACCCTCTCCGAAGGAGAAGTTCTTATCCGAGTCAAAGCATGTGGACTAAATTTCCAAGATTTGATGGCGAGGCAGGGTGCTATTGATTCCCCACCAAAAACTCCTTTCATTATGGGATCCGAGTGCGCAGGTGATATCGAGCAAGTCGGCGAGGGCGTGGAGAACTTTAAAGTGGGCGATCGAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGAGCTTGTCGCTGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGAGCTACCTCGATGCAGCGGCGATCACGATGAACTATACTGTTGCTTACATTCTGTTGTTCGAACTGGCTAATTTAACGCCCGGAAAGAATCTGTTACTCCACAGCGCCGGCGGGGGTGTG]


>consensus_428#1 GGAGAATGGCGAAGAGAAACCCACGCCAGAACCAAAGGATATGCGGGCTATAGTACTGAA CGGTTTCGGCGGACTGAAAAGTGTCAAGGCTTTGAGGAAGCCTGAGCCCACCCTCTCCGA AGGAGAAGTTCTTATCCGAGTCAAAGCATGTGGACTAAATTTCCAAGATTTGATGGCGAG GCAGGGTGCTATTGATTCCCCACCAAAAACTCCTTTCATTATGGGATCCGAGTGCGCAGG TGATATCGAGCAAGTCGGCGAGGGCGTGGAGAACTTTAAAGTGGGCGATCGAGTGGTCGC GCTTCCTGATCACAAGGCGTGGGCAGAGCTTGTCGCTGTACCAGCCACGTCCGTTTTCGC GCTACCAGCCGGAATGAGCTACCTCGATGCAGCGGCGATCACGATGAACTATACTGTTGC TTACATTCTGTTGTTCGAACTGGCTAATTTAACGCCCGGAAAGAATCTGTTACTCCACAG CGCCGGCGGGGGTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_428#0      TCTCTTGACTTTCTTGGCTAGCTGCCTTCTTGTCCTTCGTCTTTCCTTTAGCAGGAGTTG 60
consensus_428#1      ------------------------------------------------------------
                                                                                 

consensus_428#0      CTGGCTTCGGTTTTGGCTCAAGACTCGGACTCCAATACAATTTTACCGATGTTTTTACGG 120
consensus_428#1      ------------------------------------------------------------
                                                                                 

consensus_428#0      TCGTGCATCTTCTGCATAGCCTCCGGGACGTCTTCCAAAGCCCATGTCGAGTCCACCACA 180
consensus_428#1      ------------------------------------------------------------
                                                                                 

consensus_428#0      GGCTTTATTTTACCCTCGTTCCATAAAGCGAATACCCGTTCCACTGCTCGTCTCACAAAT 240
consensus_428#1      -------------------------------------------------GGAGAATGGCG 11
                                                                      *    *     

consensus_428#0      GCATGACTTCCATGCTGATACATCAAATGACGCAAATTCAACCCAGACAAGGTTTTATTC 300
consensus_428#1      AAGAGAAACCCACGCCAGAACCAAAGGATATGCGGGCTATAGTACTGAACGGTTTCGG-C 70
                         **   *** **    **   *    * **    *  *       * *****    *

consensus_428#0      TCGTCGAACAGTTTAATGGGAGATACTTTGTCCACTTGCCACCATGATCGTGCTGCTGAG 360
consensus_428#1      GGACTGAAAAGTGTCA----AGGCTTTGAGGAAGCCTGAGCCCACCCTC----TCCGAAG 122
                          *** *** * *    **    *  *    * **   ***   **    * *  **

consensus_428#0      AAGAAGCTCTTAGTTTCGCCAGTGACAACATTACTAGATCCATAAAGAATATATTTTCCC 420
consensus_428#1      GAGAAGTTCTTA--TCCG--AGTCAAAGCAT--GTGGAC---TAAA--------TTTCCA 165
                      ***** *****  * **  *** * * ***   * **    ****        ***** 

consensus_428#0      ATAGGTTTTAGCAAAGCATATCCTTTGTTGCATTCTTCACCACAAAGGCAATCCAAGACG 480
consensus_428#1      AGATTTGATGGCGAGGCAGGGTGCT-ATTG-ATTCCCCACCAAAAACTCCTTTCATTATG 223
                     * *  *  * ** * ***      *  *** ****  ***** ***  *  * **  * *

consensus_428#0      ATATCCACACCTTCTGGTGAGATCTTTCTGACTTCGTTGCTATAGTCCGCGCCTCGTTCC 540
consensus_428#1      GGATCCGAGTGCGCAGGTGATATCGAGCAAG--TCG--GCGAGGGCGTGGAGAACTTTAA 279
                       ****       * ***** ***   *     ***  ** *  *   *     * **  

consensus_428#0      AAGATGTGATCAA-TGGTGCCAGTTGCTTTCAATGCTTCGTGCTTCGATTTGCTGCACAC 599
consensus_428#1      AGTGGGCGATCGAGTGGTCGCGCTTCCTGATCACAAGGCGTGGGCAGA---GCTTGTCGC 336
                     *    * **** * ****  *  ** **    *     ****    **   ***   * *

consensus_428#0      TCCAAAAATGGTTACATCCTTCACAGTTTTGGCCAATTGGACGACTGCCTGACCCAGACC 659
consensus_428#1      TGTACCAGCCACGTCCGTTTTCGCGCTACCAGCCGGAATGA--GCTACCT---CGATGCA 391
                     *  *  *       *    *** *  *    ***     **   ** ***   * *  * 

consensus_428#0      GCAGCAGGCGCAGCGGACCTTCGTAATCCTATTATGCAG--GCTAAAGACGGAAAAAGCA 717
consensus_428#1      GCGGCGATCACGATGAACTATACTGTTGCTTACATTCTGTTGTTCGAACTGGCTAATTTA 451
                     ** **   * *   * **  *  *  * **   ** * *  * *  *   **  **   *

consensus_428#0      TGGTCTGAAGTCTTTTCATCGCACGATCGCGAAAAAACAGCCCAGAACAGGACACAAGAT 777
consensus_428#1      ACGCCCGGAAAGAATCTGTTACTCCACAGCGCCGGCGGGGGTGTG--------------- 496
                       * * * *     *   *  * * *  ***        *    *               

consensus_428#0      GGGAAAAAAA 787
consensus_428#1      ----------
                               




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)