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Apis mellifera
cluster # 433 cluster # 433       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_433#0 length = 499 sequences # 2  
 consensus_433#1 length = 314 sequences # 2  
consensusID : consensus_433#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 499
fasta sequence 
                              [CGCCGTTCACCTATAATCACAAGTAAATGGATGGCGACGGTTCGAAAAGAAACAAAGGGGAGGAAGTAGAAGAAAAGGGCCGATGTGTCGGTGGATCGCTCGTCGCTTTCGACGCGTGGAATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTGTCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTTATTTATTTATCGACATACATGTACATGTACGCAGATAAACAAGAAAAAACACGTGGGACACGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAAGTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTTACCACGAAGCACCGCGACTTTGTTCCTCGGCCTCGATGGAGGAGAACGATTTCTCCTATTCTCGATGAAGTGGATACACGAAGA]

[+] EMBL BI509010             [CGCCGTTCACCTATAATCACAAGTAAATGGATGGCGACGGTTCGAAAAGAAACAAAGGGGAGGAAGTAGAAGAAAAGGGCCGATGTGTCGGTGGATCGCTCGTCGCTTTCGACGCGTGGAATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTGTCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTTATTTATTTATCGACATACATGTACATGTATGTCGATAAATAAAAAAAA                                                                                                                                                                                                                   ]
[+] EMBL BI504548             [      TCACCTATAATCACAAGTAAATGGATGGCGACGGTTCGAAAAGAAACAAAGGGGAGGAAGTAGAAGAAAAGGGCCGATGTGTCGGTGGATCGCTCGTCGCTTTCGACGCGTGGAATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTGTCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTTATTTATTTATCGACATACATGTACATGTACACACATACACACGAACACACACGTGGGACACGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAAGTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTTACCACGAAGCACCGCGACTTTGTTCCTCGGCCTCGATGGAGGAGAACGATTTCTCCTATTCTCGATGAAGTGGATACACGAAGA]




>consensus_433#0
CGCCGTTCACCTATAATCACAAGTAAATGGATGGCGACGGTTCGAAAAGAAACAAAGGGG
AGGAAGTAGAAGAAAAGGGCCGATGTGTCGGTGGATCGCTCGTCGCTTTCGACGCGTGGA
ATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTG
TCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTT
ATTTATTTATCGACATACATGTACATGTACGCAGATAAACAAGAAAAAACACGTGGGACA
CGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAA
GTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTTACCAC
GAAGCACCGCGACTTTGTTCCTCGGCCTCGATGGAGGAGAACGATTTCTCCTATTCTCGA
TGAAGTGGATACACGAAGA

consensusID : consensus_433#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 314
fasta sequence 
                              [GAATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTGTCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTTATTTATTTATCGACATACATGTACATGTACACACATACACACGAACACACACGTGGGACACGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAAGTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTGAATCGAGGTCAAAAAAA]

[+] EMBL BI504658             [GAATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTGTCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTTATTTATTTATCGACATACATGTACATGTACACACATACACACGAACACACACGTGGGACACGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAAGTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTGAATCGAGGTCAAAAAAA]
[+] EMBL BI504284             [GAATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTGTCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTTATTTATTTATCGACATACATGTACATGTACACACATACACACGAACACACACGTGGGACACGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAAGTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTGAATCGAGGTCAAAAAAA]




>consensus_433#1
GAATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAG
TGTCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTAT
TTATTTATTTATCGACATACATGTACATGTACACACATACACACGAACACACACGTGGGA
CACGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGA
AAGTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTGAAT
CGAGGTCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_433#0      CGCCGTTCACCTATAATCACAAGTAAATGGATGGCGACGGTTCGAAAAGAAACAAAGGGG 60
consensus_433#1      ------------------------------------------------------------
                                                                                 

consensus_433#0      AGGAAGTAGAAGAAAAGGGCCGATGTGTCGGTGGATCGCTCGTCGCTTTCGACGCGTGGA 120
consensus_433#1      ----------------------------------------------------------GA 2
                                                                               **

consensus_433#0      ATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTG 180
consensus_433#1      ATGGACGAACGAAACCGTTGCGAGAAAACGCGCGACATCACACGTTACACCCCTGGAGTG 62
                     ************************************************************

consensus_433#0      TCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTT 240
consensus_433#1      TCCTGGCACACGATAATCGGGATAAATAGATAAATACATAATACGATCGTCTATCTATTT 122
                     ************************************************************

consensus_433#0      ATTTATTTATCGACATACATGTACATGTACGCAGATAAACAAGAAAAAACACGTGGGACA 300
consensus_433#1      ATTTATTTATCGACATACATGTACATGTACACACATACACACGAACACACACGTGGGACA 182
                     ****************************** ** *** *** *** * ************

consensus_433#0      CGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAA 360
consensus_433#1      CGCGTATAAATTAGTATTAAGCGCGACAAGAATGGAATGGAGCGAGAATTAGTCGCGAAA 242
                     ************************************************************

consensus_433#0      GTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTTACCAC 420
consensus_433#1      GTGATCGGATAAGTCGGTATTTTTGACCTCGATTCAGTACCTGTTCAGCGTACTGAATCG 302
                     ****************************************************** *    

consensus_433#0      GAAGCACCGCGACTTTGTTCCTCGGCCTCGATGGAGGAGAACGATTTCTCCTATTCTCGA 480
consensus_433#1      AGGTCAAAAAAA------------------------------------------------ 314
                         **     *                                                

consensus_433#0      TGAAGTGGATACACGAAGA 499
consensus_433#1      -------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)