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Apis mellifera
cluster # 444 cluster # 444       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_444#0 length = 650 sequences # 2  
consensus_444#1 length = 552 sequences # 1  
consensus_444#2 length = 514 sequences # 1  

consensusID : consensus_444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence
                              [CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAAAAATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGATAACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCCCCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAATGAGAAAGATG]

[+] EMBL BI506206             [CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAAAA                                                                                                                                                                                             ]
[+] EMBL BI503984             [                                                                                                                                                                                                          TGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGATCTTATATATATATATATATATATATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGATAACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCCCCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAATGAGAAAGATG]


>consensus_444#0 CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGA GAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGC ACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACT TGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGA GAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAG CAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCT TGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTACGGGATGGAAATTATCGCTTT CGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAAAAATATATAAAGAAGAGAATA ATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGATAACATTGAAACAAAAAAATAT TGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCCCCGAGATGTTGTTGTTAAATG TATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAATGAGAAAGATG



consensusID : consensus_444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGGCCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAA]

[+] EMBL BI504384             [GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGGCCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAA]


>consensus_444#1 GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGG CCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGC TTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATC TACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGT CCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAA TCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAG AAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGA GGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTAC GGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATA ATAAAAAAAAAA



consensusID : consensus_444#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence
                              [CGACATAATCATCGCCAATTGTCTCGATCTGGAAAACGAGATTATATTTAATCCTCTTCGTGTCTTTTTTCCTCCGCAGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAAAA]

[-] EMBL BI504711             [CGACATAATCATCGCCAATTGTCTCGATCTGGAAAACGAGATTATATTTAATCCTCTTCGTGTCTTTTTTCCTCCGCAGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAAAA]


>consensus_444#2 CGACATAATCATCGCCAATTGTCTCGATCTGGAAAACGAGATTATATTTAATCCTCTTCG TGTCTTTTTTCCTCCGCAGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACC ACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGA CGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCT CGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACC AGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAA CCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACT TAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGT TATATATAAAGAAGAGAATAATAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_444#1      GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGG 60
consensus_444#2      ------------------------------------CGACATAATCATCGCCAATTGT-- 22
consensus_444#0      ------------------------------------------------------------
                                                                                 

consensus_444#1      CCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTAC-G 119
consensus_444#2      CTCGATCTGGAAAACGAGATTATATTTAATCCTCTT---CGTGTCTTTTTTCCTCCGCAG 79
consensus_444#0      --------------------CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTAC-G 39
                                          ** * * * *  *     **        *       * *

consensus_444#1      CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 179
consensus_444#2      CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 139
consensus_444#0      CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 99
                     ************************************************************

consensus_444#1      CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 239
consensus_444#2      CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 199
consensus_444#0      CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 159
                     ************************************************************

consensus_444#1      TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 299
consensus_444#2      TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 259
consensus_444#0      TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 219
                     ************************************************************

consensus_444#1      ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 359
consensus_444#2      ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 319
consensus_444#0      ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 279
                     ************************************************************

consensus_444#1      GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGG 419
consensus_444#2      GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGG 379
consensus_444#0      GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGG 339
                     ************************************* **********************

consensus_444#1      AGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTA 479
consensus_444#2      AGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTA 439
consensus_444#0      AGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTA 399
                     ***********************************  ************** ********

consensus_444#1      CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAAT 539
consensus_444#2      CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAAT 499
consensus_444#0      CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAA 459
                     *************************************************** ** * ** 

consensus_444#1      AA-TAAAAAAAAAA---------------------------------------------- 552
consensus_444#2      AA-TAAAAAAAAAAAA-------------------------------------------- 514
consensus_444#0      AAATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGAT 519
                     ** ** * *** **                                              

consensus_444#1      ------------------------------------------------------------
consensus_444#2      ------------------------------------------------------------
consensus_444#0      AACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCC 579
                                                                                 

consensus_444#1      ------------------------------------------------------------
consensus_444#2      ------------------------------------------------------------
consensus_444#0      CCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAA 639
                                                                                 

consensus_444#1      -----------
consensus_444#2      -----------
consensus_444#0      TGAGAAAGATG 650
                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)