These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAAAAATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGATAACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCCCCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAATGAGAAAGATG] [+] EMBL BI506206 [CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAAAA ] [+] EMBL BI503984 [ TGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGATCTTATATATATATATATATATATATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGATAACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCCCCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAATGAGAAAGATG] consensusID : consensus_444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGGCCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAA] [+] EMBL BI504384 [GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGGCCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAA] consensusID : consensus_444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CGACATAATCATCGCCAATTGTCTCGATCTGGAAAACGAGATTATATTTAATCCTCTTCGTGTCTTTTTTCCTCCGCAGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAAAA] [-] EMBL BI504711 [CGACATAATCATCGCCAATTGTCTCGATCTGGAAAACGAGATTATATTTAATCCTCTTCGTGTCTTTTTTCCTCCGCAGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_444#1 GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGG 60 consensus_444#2 ------------------------------------CGACATAATCATCGCCAATTGT-- 22 consensus_444#0 ------------------------------------------------------------ consensus_444#1 CCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTAC-G 119 consensus_444#2 CTCGATCTGGAAAACGAGATTATATTTAATCCTCTT---CGTGTCTTTTTTCCTCCGCAG 79 consensus_444#0 --------------------CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTAC-G 39 ** * * * * * ** * * * consensus_444#1 CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 179 consensus_444#2 CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 139 consensus_444#0 CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 99 ************************************************************ consensus_444#1 CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 239 consensus_444#2 CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 199 consensus_444#0 CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 159 ************************************************************ consensus_444#1 TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 299 consensus_444#2 TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 259 consensus_444#0 TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 219 ************************************************************ consensus_444#1 ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 359 consensus_444#2 ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 319 consensus_444#0 ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 279 ************************************************************ consensus_444#1 GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGG 419 consensus_444#2 GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGG 379 consensus_444#0 GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGG 339 ************************************* ********************** consensus_444#1 AGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTA 479 consensus_444#2 AGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTA 439 consensus_444#0 AGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTA 399 *********************************** ************** ******** consensus_444#1 CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAAT 539 consensus_444#2 CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAAT 499 consensus_444#0 CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAA 459 *************************************************** ** * ** consensus_444#1 AA-TAAAAAAAAAA---------------------------------------------- 552 consensus_444#2 AA-TAAAAAAAAAAAA-------------------------------------------- 514 consensus_444#0 AAATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGAT 519 ** ** * *** ** consensus_444#1 ------------------------------------------------------------ consensus_444#2 ------------------------------------------------------------ consensus_444#0 AACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCC 579 consensus_444#1 ------------------------------------------------------------ consensus_444#2 ------------------------------------------------------------ consensus_444#0 CCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAA 639 consensus_444#1 ----------- consensus_444#2 ----------- consensus_444#0 TGAGAAAGATG 650 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |