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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 917 fasta sequence
[TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGTATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACCAGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGCATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACGTGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGATCTGTGAAATGAATATCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCTTTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTTGAAAAAGTATGTGATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTATTATTCTTTTATTTGCATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAA]
[-] EMBL BI510300 [TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGTATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACCAGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGCATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCTGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGA ]
[-] EMBL BI516955 [ GTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACGTGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGAT ]
[+] EMBL BI512548 [ AGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGATCTGTGAAATGAATATCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCTTTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTTGAAAAAGTATGTGATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTATTATTCTTTTATTTGCATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAA]
consensusID : consensus_445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[CTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAACGGAAAGTTTAATTGGTGATTCAAGTTTCTTAATTTCACTTTAGTTCACCAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAATTCCGTTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGTTTCCCCTCTCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGAGAGAGGTTAAGTTCTTGGTAAAATTCAATCTTTGTTCTTCGAGAGATAAAGATATTTCTTTTCTCTTTTGATTGAAATATTGTTTAAATTGGATAATTTAAATTTTGTACAGATACATTCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTTCATCAACCTTACACTTTGAACAATCTTATGATTCCATGAGATACTTTCTTATGGATTCT]
[+] EMBL BI512205 [CTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAACGGAAAGTTTAATTGGTGATTCAAGTTTCTTAATTTCACTTTAGTTCACCAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAATTCCGTTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGTTTCCCCTCTCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGAGAGAGGTTAAGTTCTTGGTAAAATTCAATCTTTGTTCTTCGAGAGATAAAGATATTTCTTTTCTCTTTTGATTGAAATATTGTTTAAATTGGATAATTTAAATTTTGTACAGATACATTCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTTCATCAACCTTACACTTTGAACAATCTTATGATTCCATGAGATACTTTCTTATGGATTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_445#0 TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGT 60
consensus_445#1 ------------------------------------------------------------
consensus_445#0 ATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACC 120
consensus_445#1 ------------------------------------------------------------
consensus_445#0 AGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGC 180
consensus_445#1 ------------------------------------------------------------
consensus_445#0 ATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGC 240
consensus_445#1 ------------------------------------------------------------
consensus_445#0 AGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCG 300
consensus_445#1 ------------------------------------------------------------
consensus_445#0 GCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACG 360
consensus_445#1 -----------------------------------------------CTTCTCCTTTTTC 13
** *
consensus_445#0 TGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAAC 420
consensus_445#1 TGGGTTAATGAAGAAACC---ATTCTTAATACGTAATAAAATGTATAAATTAAACGGAA- 69
** ** * * ** ** * * ***** * * * **
consensus_445#0 TCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTC 480
consensus_445#1 --AGTTTAATTGGTG--ATTCA-----AGTTTCTTAATT-------TCACTTTAGTTCAC 113
* ** *** ** ** ** ** ** **** * ** * *
consensus_445#0 CTCCTTG-TGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAG 539
consensus_445#1 CAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAA 173
* * *** * * * * ** * * * * * ***
consensus_445#0 CTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTT 599
consensus_445#1 TTCCG---TTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGT-TTCCCCTC 229
* ** * * * ** * ** ** * ** ** * * ** **
consensus_445#0 GCTGATTGGACGCTGACCAGTCGAT-AGTTGTCGAACAATCTTGATCTGTGAAATGAATA 658
consensus_445#1 TCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGA---GAGAGGTTAAGT 286
** ** * * * ** * * * * ***** * *** * ** * **
consensus_445#0 TCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCT 718
consensus_445#1 TCTTGGTAAAATTCAATCTTTG-----TTCTTCGAGAGATAAAGATATTTCTTTTCTCTT 341
*** * ** * ** *** ** * * * * * * ** * * *
consensus_445#0 TTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTT-GAAAAAGTATGT 777
consensus_445#1 TTGATTGAAATA---------TTGTTTAAATTGGATAATTTAAATTTTGTACAGATACAT 392
*** ** **** ** *** ** ***** *** *** * * * ** *
consensus_445#0 GATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTA---TTATTCTTTTATTTG 834
consensus_445#1 TCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTT 452
* ** ** ** *** *** *** * **** ** * *** ** *** *
consensus_445#0 CATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATA 894
consensus_445#1 CATCAAC-CTTACACTTTGAA---CAATCTTATGATTCCATGA-GATAC--TTTCTTATG 505
**** ** *** * *** * * ** ** * **** ** ** ** * **
consensus_445#0 CGTAATAAAATGTATAAATTAAA 917
consensus_445#1 GATTCT----------------- 511
* *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |