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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence
[AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCGACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGACNNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAACGGTGTCGTTAAACTCGACATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGAGAAATGGAAAACGTTCCTTGCATTTCTATTCATGGTCGTGAACTTCATATTAACCACCGCGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGGATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCT]
[+] EMBL BI512351 [AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCGACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGACNNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAA ]
[+] EMBL BI516289 [ GAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAACGGTGTCGTTAAACTCGACATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGAGAAATGGAAAACGTTCCTTGCATTTCTATTCATGGTCGTGAACTTCATATTAACCACCGCGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGGATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCT]
consensusID : consensus_455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence
[GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTATAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTGTACTTAGTTACCTGAT]
[+] EMBL BI516367 [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACAAGTAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTATAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTGTACTTAGTTACCTGAT]
[+] EMBL BI516377 [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_455#0 AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCG 60
consensus_455#1 ------------------------------------------------------------
consensus_455#0 ACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGAC 120
consensus_455#1 ------------------------------------------------------------
consensus_455#0 NNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAAC 180
consensus_455#1 GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGA-AGTTTTGATTAT 59
* ** ** ** * * ** * ** * * * * * * * * * *
consensus_455#0 GGTGTCGTTAAACTCGAC-ATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGA 239
consensus_455#1 GATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGA 119
* * * ** ** ** * ** * ** * *** * * *** ***
consensus_455#0 GAAATGGAAAACGTTCCTTGCATTTCTATTCATG-GTCGTGAACTTCATATTAACCACCG 298
consensus_455#1 TGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTT 179
* **** **** **** ** * ** * * * * **
consensus_455#0 CGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGG 358
consensus_455#1 TGCCACT--------TCTTCAAAT---TCTTAAATCATCAAATCTTTGAGCTAACG---- 224
* * ** * * ** * *** * * * * * *
consensus_455#0 ATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGA 418
consensus_455#1 ----------AGATAGAATTTTTGGTCATTATTGTAGG--TAATGT-TTGTA---TCTAC 268
*** * *** * *** **** *** ** * * * * *
consensus_455#0 TTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCG 478
consensus_455#1 TTAT--TATTTTACAAATTA-TGTTGGTTTTTTT----------------AGGTTTATCG 309
**** **** * *** * * * ******** * **********
consensus_455#0 TTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGT 538
consensus_455#1 TTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGT 369
************************************************************
consensus_455#0 ACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATA 598
consensus_455#1 ACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATA 429
************************************************************
consensus_455#0 CCAGTCCT---------------------------------------------------- 606
consensus_455#1 CCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTA 489
********
consensus_455#0 ------------------------------------------------------------
consensus_455#1 TAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTG 549
consensus_455#0 ----------------
consensus_455#1 TACTTAGTTACCTGAT 565
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |