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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence
[GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGCCTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCTATAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTTTTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGATATTTTTGATATATTAAATTTTTATGATG]
[+] EMBL BI514116 [GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGCCTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCTATAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTTTTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGATATTTTTGATATATTAAATTTTTATGATG]
[+] EMBL BI514021 [GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGCCTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCTATAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTTTTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGATATTTTTGATATATTAAATT ]
consensusID : consensus_456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[TTGTTCACCTCTCTTCTAAAGGATTCTAAAGGATTTTGTGAATGACACGTATACATCGTGCATGCAACAGACGTAAAATACAAGACAAGGAACGTGTAACATGTTCGCCGGTGCGAACGAGTCGAAACGATGGCTCAGGGATAATAGGATACTCTTGAGAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTAC]
[+] EMBL BI515113 [TTGTTCACCTCTCTTCTAAAGGATTCTAAAGGATTTTGTGAATGACACGTATACATCGTGCATGCAACAGACGTAAAATACAAGACAAGGAACGTGTAACATGTTCGCCGGTGCGAACGAGTCGAAACGATGGCTCAGGGATAATAGGATACTCTTGAGAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTAC]
consensusID : consensus_456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[GGTACAGGTGGTGGGACTTCCTTGAGACTCGCATCGCATGAATTGCCTAATGAAATTTCTGCTCCATACGAAGTTCCACAATTTCCAATTGAACAAATTGAGAAAAAGCTTTTGATACAAAGACAATTAACCGTCAAAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCNNTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTACA]
[+] EMBL BI511139 [GGTACAGGTGGTGGGACTTCCTTGAGACTCGCATCGCATGAATTGCCTAATGAAATTTCTGCTCCATACGAAGTTCCACAATTTCCAATTGAACAAATTGAGAAAAAGCTTTTGATACAAAGACAATTAACCGTCAAAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCNNTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_456#1 TTGTTCACCTCTCTTCTAAAGGATTCTAAAGGATTTTGTGAATGACACGTATACATCGTG 60
consensus_456#2 -----------------GGTACAGGTGGTGGGACTTCCT---TGAGACTCGCATCGCATG 40
consensus_456#0 ------------------------------------------------------------
consensus_456#1 CATGCAACAGACGTAAAATACAAGACAAGGAACGTGTAACATGTTCGCCGGTGCGA--AC 118
consensus_456#2 AAT-TGCCTAATGAAATTTCTGCTCCATACGAAGTTCCACAATTTC--CAAT-TGA--AC 94
consensus_456#0 ---------------------GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGC 39
* * * * * * * ** *
consensus_456#1 GAGTCGAAACGATGGCTCAGGGATAATAGGA--TACTCTTGAGAGCTGCCAAGGATTTAG 176
consensus_456#2 AAATTGAGAAAAAGCTTTTGATACAAAGACAATTAACCGTCAAAGCTGCCAAGGATTTAG 154
consensus_456#0 CTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCT--ATAGCTGCCAAGGATTTAG 97
* * * * * * * *****************
consensus_456#1 AAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATC 236
consensus_456#2 AAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATC 214
consensus_456#0 AAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATC 157
************************************************************
consensus_456#1 ATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTG 296
consensus_456#2 ATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTG 274
consensus_456#0 ATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTG 217
************************************************************
consensus_456#1 GTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTC 356
consensus_456#2 GTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTC 334
consensus_456#0 GTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTC 277
************************************************************
consensus_456#1 AAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAA 416
consensus_456#2 AAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAA 394
consensus_456#0 AAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAA 337
************************************************************
consensus_456#1 CATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAAC 476
consensus_456#2 CATCACGGTTTTTACGCAGCATCGATAAAAGACCNNTGAGCAGTGACGATGAAGTTCAAC 454
consensus_456#0 CATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAAC 397
********************************** ************************
consensus_456#1 ATGATGATCGTAAAGCTATCGCTGAT---CATCCTGTAC--------------------- 512
consensus_456#2 ATGATGATCGTAAAGCTATCGCTGAT---CATCCTGTACA-------------------- 491
consensus_456#0 ATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTT 457
************************ * ** * *
consensus_456#1 ------------------------------------------------------------
consensus_456#2 ------------------------------------------------------------
consensus_456#0 TTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGA 517
consensus_456#1 -----------------------------
consensus_456#2 -----------------------------
consensus_456#0 TATTTTTGATATATTAAATTTTTATGATG 546
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |