These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 760 fasta sequence [AAGNAAGGTTTAGTGCCTTGCATCGACTCACTACGTTTGAATTGAAGGAAATGAAGAGGAGGGAACAAGAACGGGAAGAAGAGGAAAGACGCAAGAAAGAGGAGGCCGCGGCAGCCGAGGCAGCTCGATTAGCTAAAGCAACGCCTGTAACTAGTCCAGACGAACCACCTAGCGAGAGAGCAGAAGCAGAGGGTGTACCAAGTGGGGAACGTCCAACTGGAGAAGATGAGTCGCATGTGGCACCTCGCAAGGCTTCTACACGTACACCACAGCCTCAAGACAAGCCCAAGGAAGAACAACGAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTACAACGAAGAAAGCGTCTAATCGATCTTGGCACAAGGTGTACATGGTTGTACGTGGACAAAGCTTGTTTGTATATACGGACCAAAAATCGTACAAGGCAGCGCCTGATCAACCGTACAAGGGAGAATCTCCTCTCGATCTCAGAGGAGCTACTATTACCGTGGCGAGTGATTATACTAAGAAGAAACACGTCTTCCGAGTAAAGTCACAAAGCGGATCAGATTTCCTATTTCAGGCTAAAGATGATTCTGAAATGAACGAATGGGTTACCGTGTTGAATCAAGCGGCACAAGGTACATCAGGCGCGGGCACATCCAGGGCGCACACTTTGCCCGCGCCCACGCAAGCCGAAACTAAACGACGTAGTTTCTTCACTCTCAAGAAAAACTAAACTGGAGCAGT] [+] EMBL BI512830 [AAGNAAGGTTTAGTGCCTTGCATCGACTCACTACGTTTGAATTGAAGGAAATGAAGAGGAGGGAACAAGAACGGGAAGAAGAGGAAAGACGCAAGAAAGAGGAGGCCGCGGCAGCCGAGGCAGCTCGATTAGCTAAAGCAACGCCTGTAACTAGTCCAGACGAACCACCTAGCGAGAGAGCAGAAGCAGAGGGTGTACCAAGTGGGGAACGTCCAACTGGAGAAGATGAGTCGCATGTGGCACCTCGCAAGGCTTCTACACGTACACCACAGCCTCAAGACAAGCCCAAGGAAGAACAACGAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTACAACGAAGAAAGCGTCTAATCGATCTTGGCACAAGGTGTACATGGTTGTACGTGGACAAAG ] [+] EMBL BI511281 [ TGTAACTAGTCCAGACGAACCACCTAGCGAGAGAGCAGAAGCAGAGGGTGTACCAAGTGGGGAACGTCCAACTGGAGAAGATGAGTCGCATGTGGCACCTCGCAAGGCTTCTACACGTACACCACAGCCTCAAGACAAGCCCAAGGAAGAACAACGAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTACAACGAAGAAAGCGTCTAATCGATCTTGGCACA ] [+] EMBL BI516414 [ aaCTGGAGAAGATGAGTCGCATGAACAACGAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTACAACGAAGAAAGCGTCTAATCGATCTTGGCACAAGGTGTACATGGTTGTACGTGGACAAAGCTTGTTTGTATATACGGACCAAAAATCGTACAAGGCAGCGCCTGATCAACCGTACAAGGGAGAATCTCCTCTCGATCTCAGAGGAGCTACTATTACCGTGGCGAGTGATTATACTAAGAAGAAACACGTCTTCCGAGTAAAGTCACAAAGCGGATCAGATTTCCTATTTCAGGCTAAAGATGATTCTGAAATGAACGAATGGGTTACCGTGTTGAATCAAGCGGCACAAGGTACATCAGGCGCGGGCACATCCAGGGCGCACACTTTGCCCGCGCCCACGCAAGCCGAAACTAAACGACGTAGTTTCTTCACTCTCAAGAAAAACTAAACTGGAGCAGT] consensusID : consensus_464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TGTAACTAGTCCAGACGAACCACCTAGCGAGAGAGCAGAAGCAGAGGGTGTACCAAGTGGGGAACGTCCAACTGGAGAAGATGAGTCGCATGAACAACGAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTACAACGAAGAAAGCGTCTAATCGATCTTGGCACAAGGTGTACATGGTTGTACGTGGACAAAGCTTGTTTGTATATACGGACCAAAAATCGTACAAGGCAGCGCCTGATCAACCGTACAAGGGAGAATCTCCTCTCGATCTCAGAGGAGCTACTATTACCGTGGCGAGTGATTATACTAAGAAGAAACACGTCTTCCGAGTAAAGTCACAAAGCGGATCAGATTTCCTATTTCAGGCTAAAGATGATTCTGAAATGAACGAATGGGTTACCGTGTTGAATCAAGCGGCACAAGGTACATCAGGCGCGGGCACATCCAGGGCGCACACTTTGCCCGCGCCCACGCAAGCCGAAACTAAACGAC] [+] EMBL BI515813 [TGTAACTAGTCCAGACGAACCACCTAGCGAGAGAGCAGAAGCAGAGGGTGTACCAAGTGGGGAACGTCCAACTGGAGAAGATGAGTCGCATGAACAACGAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTACAACGAAGAAAGCGTCTAATCGATCTTGGCACAAGGTGTACATGGTTGTACGTGGACAAAGCTTGTTTGTATATACGGACCAAAAATCGTACAAGGCAGCGCCTGATCAACCGTACAAGGGAGAATCTCCTCTCGATCTCAGAGGAGCTACTATTACCGTGGCGAGTGATTATACTAAGAAGAAACACGTCTTCCGAGTAAAGTCACAAAGCGGATCAGATTTCCTATTTCAGGCTAAAGATGATTCTGAAATGAACGAATGGGTTACCGTGTTGAATCAAGCGGCACAAGGTACATCAGGCGCGGGCACATCCAGGGCGCACACTTTGCCCGCGCCCACGCAAGCCGAAACTAAACGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_464#0 AAGNAAGGTTTAGTGCCTTGCATCGACTCACTACGTTTGAATTGAAGGAAATGAAGAGGA 60 consensus_464#1 ------------------------------------------------------------ consensus_464#0 GGGAACAAGAACGGGAAGAAGAGGAAAGACGCAAGAAAGAGGAGGCCGCGGCAGCCGAGG 120 consensus_464#1 ------------------------------------------------------------ consensus_464#0 CAGCTCGATTAGCTAAAGCAACGCCTGTAACTAGTCCAGACGAACCACCTAGCGAGAGAG 180 consensus_464#1 -------------------------TGTAACTAGTCCAGACGAACCACCTAGCGAGAGAG 35 *********************************** consensus_464#0 CAGAAGCAGAGGGTGTACCAAGTGGGGAACGTCCAACTGGAGAAGATGAGTCGCATGTGG 240 consensus_464#1 CAGAAGCAGAGGGTGTACCAAGTGGGGAACGTCCAACTGGAGAAGATGAGTCGCATG--- 92 ********************************************************* consensus_464#0 CACCTCGCAAGGCTTCTACACGTACACCACAGCCTCAAGACAAGCCCAAGGAAGAACAAC 300 consensus_464#1 ------------------------------------------------------AACAAC 98 ****** consensus_464#0 GAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTA 360 consensus_464#1 GAAGTCCCACCGACGATGAATTCGAAGGCGTATTGCAACGGAAGCACGAATGGGAGAGTA 158 ************************************************************ consensus_464#0 CAACGAAGAAAGCGTCTAATCGATCTTGGCACAAGGTGTACATGGTTGTACGTGGACAAA 420 consensus_464#1 CAACGAAGAAAGCGTCTAATCGATCTTGGCACAAGGTGTACATGGTTGTACGTGGACAAA 218 ************************************************************ consensus_464#0 GCTTGTTTGTATATACGGACCAAAAATCGTACAAGGCAGCGCCTGATCAACCGTACAAGG 480 consensus_464#1 GCTTGTTTGTATATACGGACCAAAAATCGTACAAGGCAGCGCCTGATCAACCGTACAAGG 278 ************************************************************ consensus_464#0 GAGAATCTCCTCTCGATCTCAGAGGAGCTACTATTACCGTGGCGAGTGATTATACTAAGA 540 consensus_464#1 GAGAATCTCCTCTCGATCTCAGAGGAGCTACTATTACCGTGGCGAGTGATTATACTAAGA 338 ************************************************************ consensus_464#0 AGAAACACGTCTTCCGAGTAAAGTCACAAAGCGGATCAGATTTCCTATTTCAGGCTAAAG 600 consensus_464#1 AGAAACACGTCTTCCGAGTAAAGTCACAAAGCGGATCAGATTTCCTATTTCAGGCTAAAG 398 ************************************************************ consensus_464#0 ATGATTCTGAAATGAACGAATGGGTTACCGTGTTGAATCAAGCGGCACAAGGTACATCAG 660 consensus_464#1 ATGATTCTGAAATGAACGAATGGGTTACCGTGTTGAATCAAGCGGCACAAGGTACATCAG 458 ************************************************************ consensus_464#0 GCGCGGGCACATCCAGGGCGCACACTTTGCCCGCGCCCACGCAAGCCGAAACTAAACGAC 720 consensus_464#1 GCGCGGGCACATCCAGGGCGCACACTTTGCCCGCGCCCACGCAAGCCGAAACTAAACGAC 518 ************************************************************ consensus_464#0 GTAGTTTCTTCACTCTCAAGAAAAACTAAACTGGAGCAGT 760 consensus_464#1 ---------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |