cluster # 466

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Apis mellifera
cluster # 466 cluster # 466 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_466#0 length = 601 sequences # 2

consensus_466#1 length = 422 sequences # 1
consensus_466#2 length = 194 sequences # 1

consensusID : consensus_466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 601
fasta sequence

                              [TTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCAAAAATTTTAAGTAATTTCAATTGCAATTGTTTTAAAATAGAGATTTTTGTTCAGCTGTTTTGAAAATTTCGATCGAGTTGAAACTTTTTTGCAATTATTAGTACTTTCATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAG]

[+] EMBL BI517015             [TTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCAAAAATTT                                                                                                                                                       ]
[+] EMBL BI509877             [                              GTTCAAATTTAAAAGAATTAAA        AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGAAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAATAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATTCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCAAAAATTTTAAGTAATTTCAATTGCAATTGTTTTAAAATAGAGATTTTTGTTCAGCTGTTTTGAAAATTTCGATCGAGTTGAAACTTTTTTGCAATTATTAGTACTTTCATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAG]




>consensus_466#0
TTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCAC
ATCCGTGCGCGAATTTTGTGCGAATTTTGCGATGCGTTTTGTTGATGATGAATGAGTGAA
AGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCT
AACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAA
CTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGA
TAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCTTACGTTTACGTTAAATTAA
GAAAAAAATAGTTTTCTCCCTCAAAAATTTTAAGTAATTTCAATTGCAATTGTTTTAAAA
TAGAGATTTTTGTTCAGCTGTTTTGAAAATTTCGATCGAGTTGAAACTTTTTTGCAATTA
TTAGTACTTTCATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAA
G

consensusID : consensus_466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [ATTGTAAGAGGTTCAGGGGAGGCGGAGATATTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTGATTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCT]

[+] EMBL BI509723             [ATTGTAAGAGGTTCAGGGGAGGCGGAGATATTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTGATTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCT]




>consensus_466#1
ATTGTAAGAGGTTCAGGGGAGGCGGAGATATTAATTAAACATTACCGAAAAACCCGCTGC
GTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAC
CAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTGATTGCGATGCGTTT
TGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATT
TTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTC
GCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTAT
AAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATC
CT

consensusID : consensus_466#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [CATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAGTGGACGTTAAGAGTTAATTAATCGTCCTTTGCCATCGATCCTTTGCTCAAAGGGACGAGTAAGTGGAGAAAGGATCCTCATTAACCGCGTACGAGGTGGATCCTTGTTGACCTAATTAATATTTTAGAAACCTAGTCGTTGTT]

[+] EMBL BI504016             [CATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAGTGGACGTTAAGAGTTAATTAATCGTCCTTTGCCATCGATCCTTTGCTCAAAGGGACGAGTAAGTGGAGAAAGGATCCTCATTAACCGCGTACGAGGTGGATCCTTGTTGACCTAATTAATATTTTAGAAACCTAGTCGTTGTT]




>consensus_466#2
CATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAGTGGACGTTA
AGAGTTAATTAATCGTCCTTTGCCATCGATCCTTTGCTCAAAGGGACGAGTAAGTGGAGA
AAGGATCCTCATTAACCGCGTACGAGGTGGATCCTTGTTGACCTAATTAATATTTTAGAA
ACCTAGTCGTTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_466#0      ------------------------------TTAATTAAACATTACCGAAAAACCCGCTGC 30
consensus_466#1      ATTGTAAGAGGTTCAGGGGAGGCGGAGATATTAATTAAACATTACCGAAAAACCCGCTGC 60
consensus_466#2      ------------------------------------------------------------
                                                                                 

consensus_466#0      GTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 90
consensus_466#1      GTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--------- 111
consensus_466#2      ------------------------------------------------------------
                                                                                 

consensus_466#0      AGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTT--- 147
consensus_466#1      ---GAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTGAT 168
consensus_466#2      ------------------------------------------------------------
                                                                                 

consensus_466#0      TGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAAT 207
consensus_466#1      TGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAAT 228
consensus_466#2      -----------------------------------------------CATTAAATAATAT 13
                                                                     * *  * ** **

consensus_466#0      ACGTGTGTAATTTTTCTAGAATAAC--AAAGGCCTAACTCCACTTTCTGTCCTC-TTAAC 264
consensus_466#1      ACGTGTGTAATTTTTCTAGAATAAC--AAAGGCCTAACTCCACTTTCTGTCCTC-TTAAC 285
consensus_466#2      TCTATCATTTCTTATACGATATAAGCAAAAGATTGAAGTGGACGTTAAGAGTTAATTAAT 73
                      *     *   ** *     ****   ****    ** *  ** **  *   *  **** 

consensus_466#0      AGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCAT 324
consensus_466#1      AGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCAT 345
consensus_466#2      CGTCCTTTGCCATCGATCCTTTGCTCAAAGGGACGAGTAAGTGGAGAAAGGATCCTCATT 133
                      ****  **  *       *     ** * *    * * * * *        * **   *

consensus_466#0      CATCTTTTTTTTTATAAATAATT-TTCATTCAATTGATAGTTAAAATTAGAAATTTATTT 383
consensus_466#1      CATCTTTTTTTTTATAAATAATT-TTCATTCAATTGATAGTTAAAATTAGAAATTTATTT 404
consensus_466#2      AACCGCGTACGAGGTGGATCCTTGTTGACCTAATTAATATTT-----TAGAAACCTAGTC 188
                      * *   *      *  **  ** ** *   **** *** **     ******  ** * 

consensus_466#0      CACATCCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCA 443
consensus_466#1      CACATCCCCTTCGATCCT------------------------------------------ 422
consensus_466#2      GTTGTT------------------------------------------------------ 194
                         *                                                       

consensus_466#0      AAAATTTTAAGTAATTTCAATTGCAATTGTTTTAAAATAGAGATTTTTGTTCAGCTGTTT 503
consensus_466#1      ------------------------------------------------------------
consensus_466#2      ------------------------------------------------------------
                                                                                 

consensus_466#0      TGAAAATTTCGATCGAGTTGAAACTTTTTTGCAATTATTAGTACTTTCATTAAATAATAT 563
consensus_466#1      ------------------------------------------------------------
consensus_466#2      ------------------------------------------------------------
                                                                                 

consensus_466#0      TCTATCATTTCTTATACGATATAAGCAAAAGATTGAAG 601
consensus_466#1      --------------------------------------
consensus_466#2      --------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)