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Apis mellifera
cluster # 468 cluster # 468       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_468#0 length = 1122 sequences # 3  
 consensus_468#1 length = 501 sequences # 1  
consensusID : consensus_468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1122
fasta sequence 
                              [AAAAGAAAAAGGGGGGGAGAAAAAAAAAAAGAAACAAAATTCCTTTAACCCTTTAAACCGTTGCCGTTTAATAATAATATAGTTGGAGGAACGGAAAGAAGAAGGAGGAAAAAAAACGAGAGAGAGGAAAGATCGTTAGGACGAGGGGAGGAGTACAGATTAAGGATTAAGAAAGAAATGAACGGGAAGATCGACGACGGTTTAACAAGTATAACGAGGTACGAAGTAATCCCATCTGATTTGCCTATCTATGATCCCACCGTGCTTTAGACCTTCGTAACCATCCCTCCTCCTCCTCGCCTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTACATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCGCCCTCTCCCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTGTCCCCCGGTATTTGCACGATATTTTTTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCAGAATACGAGTATGAGTTCGCGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTAGGGAATAAAGAGGGACGAGTGTGAAAGAAGGGGGACGAGCGAGATGAGGAGAGAGAAAAAACGGGAGAGTGGGGGAGAGGGAGGCGGACGACTTTGTTATTAATCAAAAGATAGACGGATCGTGCTTTAAACGAATCAAAAGCGTTTCGAATCAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGGAAAAAAAGGGGAGGGGGAAAAAAGAAGAAGAAGAAGAAGAAGAGAAGAAAACGCGATGATCAAAGAACGATACAGGGGAGGGAACGTTTGCGAGACGTTGCCAGACGTTGAAGAGAACACATATTTGTGCATCGAGTGCACAATAGAATTACGAGAGAATCGACGAAATCAAACCCGCTTGGGACAAACGTAGCGTTTAGGAATTTATCAGTAAATTTAAAAATAATAATTTCCCGAAAAAAAACGATTCGATTACCCGTAGTACGTGGATATGGATATAAAAGNNGTGCCTTCAGTCCATCTCGCGGACCACAAATATTTCGTGCCATTAATTCCT]

[+] EMBL BI515258             [AAAAGAAAAAGGGGGGGAGAAAAAAAAAAAGAAACAAAATTCCTTTAACCCTTTAAACCGTTGCCGTTTAATAATAATATAGTTGGAGGAACGGAAAGAAGAAGGAGGAAAAAAAACGAGAGAGAGGAAAGATCGTTAGGACGAGGGGAGGAGTACAGATTAAGGATTAAGAAAGAAATGAACGGGAAGATCGACGACGGTTTAACAAGTATAACGAGGTACGAAGTAATCCCATCTGATTTGCCTATCTATGATCCCACCGTGCTTTAGACCTTCGTAACCATCCCTCCTCCTCCTCGCCTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTACATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCGCCCTCTCCCTCTCTCTTTCTCTCTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI506118             [                                                                                                                                                            AGATTAAGGATTAAGAAAGAAATGAACGGGAAGATCGACGACGGTTTAACAAGTATAACGAGGTACGAAGTAATCCCATCTGATTTGCCTATCTATGATCCCACCGTGCTTTAGACCTTCGTAACCATCCCTCCTCCTCCTCGCCTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTACATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCGCCCTCTCCCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTGTCCCCCGGTATTTGCACGATATTTTTTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCAGAATACGAGTATGAGTTCGCGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTAGGGAATAAAGAGGGACGAGTGTGAAAGAAGGGGGACGAGCGAGATGAGGAGAGAGAAAAAACGGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI511781             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATGAGTTCGCGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTAGGGAATAAAGAGGGACGAGTGTGAAAGAAGGGGGACGAGCGAGATGAGGAGAGAGAAAAAACGGGAGAGTGGGGGAGAGGGAGGCGGACGACTTTGTTATTAATCAAAAGATAGACGGATCGTGCTTTAAACGAATCAAAAGCGTTTCGAATCAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGGAAAAAAAGGGGAGGGGGAAAAAAGAAGAAGAAGAAGAAGAAGAGAAGAAAACGCGATGATCAAAGAACGATACAGGGGAGGGAACGTTTGCGAGACGTTGCCAGACGTTGAAGAGAACACATATTTGTGCATCGAGTGCACAATAGAATTACGAGAGAATCGACGAAATCAAACCCGCTTGGGACAAACGTAGCGTTTAGGAATTTATCAGTAAATTTAAAAATAATAATTTCCCGAAAAAAAACGATTCGATTACCCGTAGTACGTGGATATGGATATAAAAGNNGTGCCTTCAGTCCATCTCGCGGACCACAAATATTTCGTGCCATTAATTCCT]




>consensus_468#0
AAAAGAAAAAGGGGGGGAGAAAAAAAAAAAGAAACAAAATTCCTTTAACCCTTTAAACCG
TTGCCGTTTAATAATAATATAGTTGGAGGAACGGAAAGAAGAAGGAGGAAAAAAAACGAG
AGAGAGGAAAGATCGTTAGGACGAGGGGAGGAGTACAGATTAAGGATTAAGAAAGAAATG
AACGGGAAGATCGACGACGGTTTAACAAGTATAACGAGGTACGAAGTAATCCCATCTGAT
TTGCCTATCTATGATCCCACCGTGCTTTAGACCTTCGTAACCATCCCTCCTCCTCCTCGC
CTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTAC
ATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCGCCCTCTCC
CTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTGTCCCCCGGTATTTGCACGATATTTT
TTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCAGAATACGAGTATGAGTTCG
CGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTAGGG
AATAAAGAGGGACGAGTGTGAAAGAAGGGGGACGAGCGAGATGAGGAGAGAGAAAAAACG
GGAGAGTGGGGGAGAGGGAGGCGGACGACTTTGTTATTAATCAAAAGATAGACGGATCGT
GCTTTAAACGAATCAAAAGCGTTTCGAATCAAAAAAAGAAAGAAAGAAAGAAAGAAAGAA
AAAGGAAAAAAAGGGGAGGGGGAAAAAAGAAGAAGAAGAAGAAGAAGAGAAGAAAACGCG
ATGATCAAAGAACGATACAGGGGAGGGAACGTTTGCGAGACGTTGCCAGACGTTGAAGAG
AACACATATTTGTGCATCGAGTGCACAATAGAATTACGAGAGAATCGACGAAATCAAACC
CGCTTGGGACAAACGTAGCGTTTAGGAATTTATCAGTAAATTTAAAAATAATAATTTCCC
GAAAAAAAACGATTCGATTACCCGTAGTACGTGGATATGGATATAAAAGNNGTGCCTTCA
GTCCATCTCGCGGACCACAAATATTTCGTGCCATTAATTCCT

consensusID : consensus_468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence 
                              [TAACCATCCCTCCTCCTCCTCGCCTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTACATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCTCCCTCTCCCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTGTCCCCCGGTATTTGCACGATATTTTTTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCAGAATACGAGTATGAGTTCGCGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTGGGGAATAGAGAGGGACGAGTGTGAAAGAAGGACACGTGAAAGAAGGGGGACGAGCGAGACGAGGAGAGAGAAAGAACGGGAGAGTGGGGGAGAGGGAGGCGGACGACTTTGTTATTAATCAAAAGATAGACGGATCGTGCTTTAAACGAATCAAAAGCGTTTCGAATCAAAAAAAGAAAGAAAGA]

[+] EMBL BI513341             [TAACCATCCCTCCTCCTCCTCGCCTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTACATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCTCCCTCTCCCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTGTCCCCCGGTATTTGCACGATATTTTTTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCAGAATACGAGTATGAGTTCGCGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTGGGGAATAGAGAGGGACGAGTGTGAAAGAAGGACACGTGAAAGAAGGGGGACGAGCGAGACGAGGAGAGAGAAAGAACGGGAGAGTGGGGGAGAGGGAGGCGGACGACTTTGTTATTAATCAAAAGATAGACGGATCGTGCTTTAAACGAATCAAAAGCGTTTCGAATCAAAAAAAGAAAGAAAGA]




>consensus_468#1
TAACCATCCCTCCTCCTCCTCGCCTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTT
AAGCACGATCCGATGCTTCGTACATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATC
GCCCTTTGATAGCCTCCCTCTCCCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTGTCCCCC
GGTATTTGCACGATATTTTTTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCA
GAATACGAGTATGAGTTCGCGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAG
CTGATAGAGAAACGTGGGGAATAGAGAGGGACGAGTGTGAAAGAAGGACACGTGAAAGAA
GGGGGACGAGCGAGACGAGGAGAGAGAAAGAACGGGAGAGTGGGGGAGAGGGAGGCGGAC
GACTTTGTTATTAATCAAAAGATAGACGGATCGTGCTTTAAACGAATCAAAAGCGTTTCG
AATCAAAAAAAGAAAGAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_468#0      AAAAGAAAAAGGGGGGGAGAAAAAAAAAAAGAAACAAAATTCCTTTAACCCTTTAAACCG 60
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      TTGCCGTTTAATAATAATATAGTTGGAGGAACGGAAAGAAGAAGGAGGAAAAAAAACGAG 120
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      AGAGAGGAAAGATCGTTAGGACGAGGGGAGGAGTACAGATTAAGGATTAAGAAAGAAATG 180
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      AACGGGAAGATCGACGACGGTTTAACAAGTATAACGAGGTACGAAGTAATCCCATCTGAT 240
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      TTGCCTATCTATGATCCCACCGTGCTTTAGACCTTCGTAACCATCCCTCCTCCTCCTCGC 300
consensus_468#1      -------------------------------------TAACCATCCCTCCTCCTCCTCGC 23
                                                          ***********************

consensus_468#0      CTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTAC 360
consensus_468#1      CTATTCTTAACCTCCATGCTTCGTCTCTTTCGGTTTTAAGCACGATCCGATGCTTCGTAC 83
                     ************************************************************

consensus_468#0      ATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCGCCCTCTCC 420
consensus_468#1      ATGCCCCGCTACTTCCTCTGTTTCGTCGCTCGAAATCGCCCTTTGATAGCCTCCCTCTCC 143
                     *************************************************** ********

consensus_468#0      CTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTGTCCCCCGGTATTTGCACGATATTTT 480
consensus_468#1      CTCTCTCTTTCTCTCTC----TCTCTCTCTCTCTGTCCCCCGGTATTTGCACGATATTTT 199
                     *****************    ***************************************

consensus_468#0      TTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCAGAATACGAGTATGAGTTCG 540
consensus_468#1      TTTCAATAATGAAACTGTCTCATCATACGGGAGCGCGTGCAGAATACGAGTATGAGTTCG 259
                     ************************************************************

consensus_468#0      CGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTAGGG 600
consensus_468#1      CGACGAAACCCATAGGATTTAGACGAGTGAACCGAATAGAGCTGATAGAGAAACGTGGGG 319
                     ******************************************************** ***

consensus_468#0      AATAAAGAGGGACGAGTGTGAAAGAAGG---------------GGGACGAGCGAGATGAG 645
consensus_468#1      AATAGAGAGGGACGAGTGTGAAAGAAGGACACGTGAAAGAAGGGGGACGAGCGAGACGAG 379
                     **** ***********************               ************* ***

consensus_468#0      GAGAGAGAAAAAACGGGAGAGTGGGGGAGAGGGAGGCGGACGACTTTGTTATTAATCAAA 705
consensus_468#1      GAGAGAGAAAGAACGGGAGAGTGGGGGAGAGGGAGGCGGACGACTTTGTTATTAATCAAA 439
                     ********** *************************************************

consensus_468#0      AGATAGACGGATCGTGCTTTAAACGAATCAAAAGCGTTTCGAATCAAAAAAAGAAAGAAA 765
consensus_468#1      AGATAGACGGATCGTGCTTTAAACGAATCAAAAGCGTTTCGAATCAAAAAAAGAAAGAAA 499
                     ************************************************************

consensus_468#0      GAAAGAAAGAAAGAAAAAGGAAAAAAAGGGGAGGGGGAAAAAAGAAGAAGAAGAAGAAGA 825
consensus_468#1      GA---------------------------------------------------------- 501
                     **                                                          

consensus_468#0      AGAGAAGAAAACGCGATGATCAAAGAACGATACAGGGGAGGGAACGTTTGCGAGACGTTG 885
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      CCAGACGTTGAAGAGAACACATATTTGTGCATCGAGTGCACAATAGAATTACGAGAGAAT 945
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      CGACGAAATCAAACCCGCTTGGGACAAACGTAGCGTTTAGGAATTTATCAGTAAATTTAA 1005
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      AAATAATAATTTCCCGAAAAAAAACGATTCGATTACCCGTAGTACGTGGATATGGATATA 1065
consensus_468#1      ------------------------------------------------------------
                                                                                 

consensus_468#0      AAAGNNGTGCCTTCAGTCCATCTCGCGGACCACAAATATTTCGTGCCATTAATTCCT 1122
consensus_468#1      ---------------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)