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Apis mellifera
cluster # 472 cluster # 472       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_472#0 length = 770 sequences # 3  
 consensus_472#1 length = 372 sequences # 1  
consensusID : consensus_472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 770
fasta sequence 
                              [CCTGAGAAATCACAGGATCACGTAAAAAAAAAAAAAAACCTGGATCCGGTAATCCGGTTTACCGAAGAGAAATCATCCCTCCCTGCCTCCCTCCCTGCTCCCTCCTCCCTCCTCCTCCACCTCCCTCGTCGCGGGGGATCGAGGATCAGTGATAATCAGTCGAGTCAGCACAATTTAGGAAAACGAAGGAACTCGTCGCCGAGAGCGGTGTAGACACGATTTCGTCGATTCGAAGCTTCGTCGAACCGATGCACCAAAAGGCTGAAGGATGGAGGCTAGCGAGTGGGATCACGCGACCTTGAGAGAAGAGGAATTCGAGCAGCATGCGGTATATTTGGTACCGGATGTGTCGGCATCGCCTGGCGATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTCCTCAAACCTTCTCAGGCCCTCAACGATGTTTTGGGTGTGTGGAGCACGAGTTACATACCCAAGGGGACGCGGTTCGGTCCCCTCGTGGGCCATGTGTACACCAAGGACTCGGTGCCGGCCGATGCGAACCGGAAGTACTTCTGGAGGGTGTACAAAAACAACGAGCTGTTCTACTACATCGACGGTTATGACGTCCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTATTCGTCCGAATCGCAGAACCTAATAGCATGCCAGTACAAGATGAACATATATTTTTACACGATCAAGCCGATACTACCGAATCAAGAGCTTCTGGTGTGGTATTGCAGGGAGTTCGCGGAAAGGCTCAATT]

[+] EMBL BI507493             [CCTGAGAAATCACAGGATCACGTAAAAAAAAAAAAAAACCTGGATCCGGTAATCCGGTTTACCGAAGAGAAATCATCCCTCCCTGCCTCCCTCCCTGCTCCCTCCTCCCTCCTTCTCCACTTCCCTCGTCGCGGGGGATCGAGGATCAGTGATAATCAGTCGAGTCAGCACAATTTAGGAAAACGAAGGAACTCGTCGCCGAGAGCGGTGTAGACACGATTTCGTCGATTCGAAGCTTCGTCGAACCGATGCACCAAAAGGCTGAAGGATGGAGGCTAGCGAGTGGGATCACGCGACCTTGAGAGAAGAGGAATTCGAGCAGCATGCGGTATATTTGGTACCGGATGTGTCGGCATCGCCTGGCGATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTCCTCAAACCTTCTCAGGCCCTCAACGATGTTTTGGGTGTGTGGAGCAC                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI508776             [                                                                                                                TCCTCCACCTCCCTCGTCGCGGGGGATCGAGGATCAGTGATAATCAGTCGAGTCAGCACAATTTAGGAAAACGAAGGAACTCGTCGCCGAGAGCGGTGTAGACACGATTTCGTCGATTCGAAGCTTCGTCGAACCGATGCACCAAAAGGCTGAAGGATGGAGGCTAGCGAGTGGGATCACGCGACCTTGAGAGAAGAGGAATTCGAGCAGCATGCGGTATATTTGGTACCGGATGTGTCGGCATCGCCTGGCGATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTCCTCAAACCTTCTCAGGCCCTCAACGATGTTTTGGGTGTGTGGAGCACGAGTTACATACCCAAGGGGACGCGGTTCGGTCCCCTCGTGGGCCATGTGTACACCAAGGACTCGGTGCCGGCCGATGCGAACCGGAAGTACTTCTGGAGGGTGTACAAAAACAACGAGCTGTTCTACTACATCGACGGTTATGACGTCCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTAT                                                                                                                                  ]
[+] EMBL BI507611             [                                                                                                                                                                                                                                                              ttgcacagTGAAGGATGGAGGCTAGCGAGTGGGATCACGCGACCTTGAGAGAAGAGGAATTCGAGCAGCATGCGGTATATTTGGTACCGGATGTGTCGGCATCGCCTGGCGATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTCCTCAAACCTTCTCAGGCCCTCAACGATGTTTTGGGTGTGTGGAGCACGAGTTACATACCCAAGGGGACGCGGTTCGGTCCCCTCGTGGGCCATGTGTACACCAAGGACTCGGTGCCGGCCGATGCGAACCGGAAGTACTTCTGGAGGGTGTACAAAAACAACGAGCTGTTCTACTACATCGACGGTTATGACGTCCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTATTCGTCCGAATCGCAGAACCTAATAGCATGCCAGTACAAGATGAACATATATTTTTACACGATCAAGCCGATACTACCGAATCAAGAGCTTCTGGTGTGGTATTGCAGGGAGTTCGCGGAAAGGCTCAATT]




>consensus_472#0
CCTGAGAAATCACAGGATCACGTAAAAAAAAAAAAAAACCTGGATCCGGTAATCCGGTTT
ACCGAAGAGAAATCATCCCTCCCTGCCTCCCTCCCTGCTCCCTCCTCCCTCCTCCTCCAC
CTCCCTCGTCGCGGGGGATCGAGGATCAGTGATAATCAGTCGAGTCAGCACAATTTAGGA
AAACGAAGGAACTCGTCGCCGAGAGCGGTGTAGACACGATTTCGTCGATTCGAAGCTTCG
TCGAACCGATGCACCAAAAGGCTGAAGGATGGAGGCTAGCGAGTGGGATCACGCGACCTT
GAGAGAAGAGGAATTCGAGCAGCATGCGGTATATTTGGTACCGGATGTGTCGGCATCGCC
TGGCGATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTCCTCAAACCTTCTCA
GGCCCTCAACGATGTTTTGGGTGTGTGGAGCACGAGTTACATACCCAAGGGGACGCGGTT
CGGTCCCCTCGTGGGCCATGTGTACACCAAGGACTCGGTGCCGGCCGATGCGAACCGGAA
GTACTTCTGGAGGGTGTACAAAAACAACGAGCTGTTCTACTACATCGACGGTTATGACGT
CCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTATTCGTCCGAATCGCAGAACCT
AATAGCATGCCAGTACAAGATGAACATATATTTTTACACGATCAAGCCGATACTACCGAA
TCAAGAGCTTCTGGTGTGGTATTGCAGGGAGTTCGCGGAAAGGCTCAATT

consensusID : consensus_472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence 
                              [CCGATACTACCGAATCAAGAGCTTCTGGTGTGGTATTGCAGGGAGTTCGCGGAAAGGCTCAATTACCCGTTGACGGGTGAACTAATGCTTCAAAGAATACGACAACAAGTACAACAATCTGCGTTACCTACGGAAATCCCAGCGACCGTGGACGTGGTGTCACCCCTGAAGGACTCGTCGATCTACGAGAGACGGTCGCAAATGACCCCGACGGACGGCTCGGTCAGATCGGACGAGGGCTACCATTCGAACGGGTACCACGACGAGATCCTCACCCCGCCTGAGGAGAGCAGCGAGTCGGACTCGGAGAACAATTACGTGCTCGATTTCAGCAAGAACGCGAAAACGTCGGTGTGCAGCAGCAACGAGGTG]

[+] EMBL BI505072             [CCGATACTACCGAATCAAGAGCTTCTGGTGTGGTATTGCAGGGAGTTCGCGGAAAGGCTCAATTACCCGTTGACGGGTGAACTAATGCTTCAAAGAATACGACAACAAGTACAACAATCTGCGTTACCTACGGAAATCCCAGCGACCGTGGACGTGGTGTCACCCCTGAAGGACTCGTCGATCTACGAGAGACGGTCGCAAATGACCCCGACGGACGGCTCGGTCAGATCGGACGAGGGCTACCATTCGAACGGGTACCACGACGAGATCCTCACCCCGCCTGAGGAGAGCAGCGAGTCGGACTCGGAGAACAATTACGTGCTCGATTTCAGCAAGAACGCGAAAACGTCGGTGTGCAGCAGCAACGAGGTG]




>consensus_472#1
CCGATACTACCGAATCAAGAGCTTCTGGTGTGGTATTGCAGGGAGTTCGCGGAAAGGCTC
AATTACCCGTTGACGGGTGAACTAATGCTTCAAAGAATACGACAACAAGTACAACAATCT
GCGTTACCTACGGAAATCCCAGCGACCGTGGACGTGGTGTCACCCCTGAAGGACTCGTCG
ATCTACGAGAGACGGTCGCAAATGACCCCGACGGACGGCTCGGTCAGATCGGACGAGGGC
TACCATTCGAACGGGTACCACGACGAGATCCTCACCCCGCCTGAGGAGAGCAGCGAGTCG
GACTCGGAGAACAATTACGTGCTCGATTTCAGCAAGAACGCGAAAACGTCGGTGTGCAGC
AGCAACGAGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_472#0      CCTGAGAAATCACAGGATCACGTAAAAAAAAAAAAAAACCTGGATCCGGTAATCCGGTTT 60
consensus_472#1      ------------------------------------------------------------
                                                                                 

consensus_472#0      ACCGAAGAGAAATCATCCCTCCCTGCCTCCCTCCCTGCTCCCTCCTCCCTCCTCCTCCAC 120
consensus_472#1      ------------------------------------------------------------
                                                                                 

consensus_472#0      CTCCCTCGTCGCGGGGGATCGAGGATCAGTGATAATCAGTCGAGTCAGCACAATTTAGGA 180
consensus_472#1      ------------------------------------------------------------
                                                                                 

consensus_472#0      AAACGAAGGAACTCGTCGCCGAGAGCGGTGTAGACACGATTTCGTCGATTCGAAGCTTCG 240
consensus_472#1      ------------------CCGATACTACCGAATCAAGAGCTTC--TGGTGTGGTATTGCA 40
                                       **** *     * *   *    ***   * *  *    * * 

consensus_472#0      TCGAACCGATGCACCAAAAGGCTGAAGGATGGAGGCTAGCGAGTGGGATCACGCGACCTT 300
consensus_472#1      GGGAGTT----CGCGGAAAGGCTCAATTACC--CGTTGACGGGTGAACTAATGC----TT 90
                       **       * *  ******* **  *     * *  ** ***   * * **    **

consensus_472#0      GAGAGAAGAGGAATTCGAGCAGCATGCGGTATATTTGGTACCGGATGTGTCGGCATCGCC 360
consensus_472#1      CAAAGAATACGACAACAAGTACAACAATCTGCGTTACCTAC-GGAAATCCCAGCGACCGT 149
                      * **** * **   * ** *  *     *   **   *** ***  *  * **  *   

consensus_472#0      TGGCG--ATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTCCTCAAACCTTCT 418
consensus_472#1      GGACGTGGTGTCACCCCTGAAGGACTCGTCGATCTACGAGAGACGGTCG-CAAAT----- 203
                      * **   *  **  * **  *       *   * * ** *   ****  ****      

consensus_472#0      CAGGCCCTCAACGATGTTTTGGGTGTGTGGAGCACGAGTTACATACCCAAGGGGACGCGG 478
consensus_472#1      --GACCCCGACGGACGGCTCGGTCAGATCGGACGAGGGCTACCATTCGAACGGGTACCAC 261
                       * ***  *  ** *  * **     * *  *  * * ***    * ** ***   *  

consensus_472#0      TTCGGTCCCCTCGTGGGCCATGTGTACACCAAGGACTCGGTGCCGGCCGATGCGAACCGG 538
consensus_472#1      GACGAGATCCTCACCCCGCCTGAGGAGAGCAGCGAGTCGGACTCGGAGAACAATTACGTG 321
                       **    ****      * ** * * * **  ** ****   ***   *     **  *

consensus_472#0      AAGTACTTCTGGAGGGTGTACAAAAACAACGAGCTGTTCTACTACATCGACGGTTATGAC 598
consensus_472#1      CTCGATTTCAGCAAGA-ACGCGAAAACGTCGG--TGTGCAGCAGCAACGA-GGTG----- 372
                         * *** * * *     * *****  **   *** *  *  ** *** ***      

consensus_472#0      GTCCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTATTCGTCCGAATCGCAGAAC 658
consensus_472#1      ------------------------------------------------------------
                                                                                 

consensus_472#0      CTAATAGCATGCCAGTACAAGATGAACATATATTTTTACACGATCAAGCCGATACTACCG 718
consensus_472#1      ------------------------------------------------------------
                                                                                 

consensus_472#0      AATCAAGAGCTTCTGGTGTGGTATTGCAGGGAGTTCGCGGAAAGGCTCAATT 770
consensus_472#1      ----------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)