cluster # 477

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Apis mellifera
cluster # 477 cluster # 477 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_477#0 length = 548 sequences # 1

consensus_477#1 length = 485 sequences # 1
consensus_477#2 length = 472 sequences # 2

consensusID : consensus_477#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [GTCCAATGGAAATTAGACAAGGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAAAAAAAAAAAAAAAAAAGCAACGCGGTGCACCGAACCTCCACCTCGCGGCAATTCATTCAACTTCTATTGCAATCTTGCTTCCTGAGGCGTCGTTTGATACGGTAGTCCTGGGAAGGCTGCGCCTGCCGCTGTTGCAGCTGCAGCCGCTGCTGCTGGTAATCCTGCCGCTGCACCTGGTAGCGTTGCATACGTGTACGG]

[+] EMBL BI509880             [GTCCAATGGAAATTAGACAAGGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAAAAAAAAAAAAAAAAAAGCAACGCGGTGCACCGAACCTCCACCTCGCGGCAATTCATTCAACTTCTATTGCAATCTTGCTTCCTGAGGCGTCGTTTGATACGGTAGTCCTGGGAAGGCTGCGCCTGCCGCTGTTGCAGCTGCAGCCGCTGCTGCTGGTAATCCTGCCGCTGCACCTGGTAGCGTTGCATACGTGTACGG]




>consensus_477#0
GTCCAATGGAAATTAGACAAGGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCC
TTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAA
CAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAG
ACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACAT
AAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCG
ACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAAAAAAAAAAAA
AAAAAAGCAACGCGGTGCACCGAACCTCCACCTCGCGGCAATTCATTCAACTTCTATTGC
AATCTTGCTTCCTGAGGCGTCGTTTGATACGGTAGTCCTGGGAAGGCTGCGCCTGCCGCT
GTTGCAGCTGCAGCCGCTGCTGCTGGTAATCCTGCCGCTGCACCTGGTAGCGTTGCATAC
GTGTACGG

consensusID : consensus_477#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [GGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAGAAAAGAAGAAGAAAATAAAAGAACGATCGAATCGGGGTCCGTGAACATAAGCACGTTGCAAATATAAAACGCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTT]

[+] EMBL BI505430             [GGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAGAAAAGAAGAAGAAAATAAAAGAACGATCGAATCGGGGTCCGTGAACATAAGCACGTTGCAAATATAAAACGCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTT]




>consensus_477#1
GGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAA
AAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGG
AGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGT
GCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTT
GAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAA
AAGAAGAGGAAGCAGCTTAACTGTGAATAGAAAAGAAGAAGAAAATAAAAGAACGATCGA
ATCGGGGTCCGTGAACATAAGCACGTTGCAAATATAAAACGCGAATCAAACGTGTTTTCA
AAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGA
CCCTT

consensusID : consensus_477#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 472
fasta sequence

                              [GCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCTTGTAGATATGTGAAACACATTGTTGACGAAAAAAGTTTTTTCTAAATAACAGTTTAACGTAGCATTGCGTACGACCAATAGGCACGTCACGACGTTACTCGAGATGTGCCGTTAGTAATAAATAGGCATTGTAATGTAAAGTACGTTCTTATTGTAAGAATTAACAAGAGATCGTATGAGTCTGATTATTGTTGGTGAACAAATACGAGATCCGCTCGAAGATTTCGAGCATTCTCCATGAATCATCTTTGGTCTTGCTTCGAAGACCTTCGAAACGATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAAAAAA]

[+] EMBL BI507138             [GCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCTTGTAGATATGTGAAACACATTGTTGACGAAAAAAGTTTTTTCTAAATAACAGTTTAACGTAGCATTGCGTACGACCAATAGGCACGTCACGACGTTACTCGAGATGTGCCGTTAGTAATAAATAGGCATTGTAATGTAAAGTACGTTCTTATTGTAAGAATTAACAAGAGATCGTATGAGTCTGATTATTGTTGGTGAACAAATACGAGATCCGCTCGAAGATTTCGAGCATTCTCCATGAATCATCTTTGGTCTTGCTTCGAAGACCTTCGAAACGATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAAAAAA]
[+] EMBL BI503952             [                                      CGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCTTGTAGATATGTGAAACACATTGTTGACGAAAAAAGTTTTTTCTAAATAACAGTTTAACGTAGCATTGCGTACGACCAATAGGCACGTCACGACGTTACTCGAGATGTGCCGTTAGTAATAAATAGGCATTGTAATGTAAAGTACGTTCTTATTGTAAGAATTAACAAGAGATCGTATGAGTCTGATTATTGTTGGTGAACAAATACGAGATCCGCTCGAAGATTTCGAGCATTCTCCATGAATCATCTTTGGTCTTGCTTCGAAGACCTTCGAAACGATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAAAAAA]




>consensus_477#2
GCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAAT
ACTACGTATAAATATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAA
GACGAGTTTTCTTGTAGATATGTGAAACACATTGTTGACGAAAAAAGTTTTTTCTAAATA
ACAGTTTAACGTAGCATTGCGTACGACCAATAGGCACGTCACGACGTTACTCGAGATGTG
CCGTTAGTAATAAATAGGCATTGTAATGTAAAGTACGTTCTTATTGTAAGAATTAACAAG
AGATCGTATGAGTCTGATTATTGTTGGTGAACAAATACGAGATCCGCTCGAAGATTTCGA
GCATTCTCCATGAATCATCTTTGGTCTTGCTTCGAAGACCTTCGAAACGATATATAGATG
TTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_477#0      GTCCAATGGAAATTAGACAAGGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCC 60
consensus_477#1      --------------------GGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCC 40
consensus_477#2      --------------------------------------------GCGAATCAAAC-GTGT 15
                                                                 * ** **   *     

consensus_477#0      TTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAA 120
consensus_477#1      TTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAA 100
consensus_477#2      TTTCAAAAC---TGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAA 72
                     ****  ***    ** *    *** *     *  * * **     **   * ***   **

consensus_477#0      CAAGTG--CCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAAT 178
consensus_477#1      CAAGTG--CCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAAT 158
consensus_477#2      TATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCT 132
                      *  *   ** *   ** *       *   *  **    ** * ***    *   *   *

consensus_477#0      AGACGCGATATGTGAAA-ACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAA 237
consensus_477#1      AGACGCGATATGTGAAA-ACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAA 217
consensus_477#2      TGTAG--ATATGTGAAACACATTGTTGACGAAA---AAAGTTTTTTCTAAATAACAGTTT 187
                      *  *  ********** *** ** ** *   *   **  * ***  ******   **  

consensus_477#0      CATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACC 297
consensus_477#1      CATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACC 277
consensus_477#2      AACGTAGCATTGCGTACGA--CCAATAGGCACGTCACGACGTTACT--CGAGAT-GTGCC 242
                      *    * *  * * ****     * *    *** *  * **  *   ** ***    **

consensus_477#0      TCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAAAAAAAAA 357
consensus_477#1      TCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAGAAAAGAA 337
consensus_477#2      GTTAGTAATAAATAGGCATTGTAATGTAAAGTACGT--TCTTATTGTAAGAATTAACAAG 300
                        *   **  ** *       ** * * ** * *     * * *** *  *  **  * 

consensus_477#0      AAAAAAAAAGCAACGCGGTGCACCGAACCTCCACCTCGCGGCAATTCATTCAACTTCTAT 417
consensus_477#1      GAAGAAAATAAAA---GAACGATCGAATCGGGGTC-CGTGAACATAAGCACGTTGCAAAT 393
consensus_477#2      AGATCGTATGAGTC--TGATTATTGTTGGTGAACAAATACGAGATCCGCTCGA---AGAT 355
                       *    *             *  *                  **     *       **

consensus_477#0      TGCAATCTTGCTTCCTGAGGCGTCGTTTGATACGGTAGTCCTGGGAAGGCTGCGCCTGCC 477
consensus_477#1      ATAAAACGCGAATC---AAACGTGTTTT-------CAAAACTGAAAAG----CGAATCGC 439
consensus_477#2      TTCGAGCATTCTCCATGAATCATCTTTGGT-----CTTGCTTCGAAGACCTTCGAA--AC 408
                         * *      *   *  * *  **              *   *      **     *

consensus_477#0      GCTGTTGCAGCTGCAGCCGCTGCTGCTGGTAATCCTGCCGCTGCACCTGGTAGCGTTGCA 537
consensus_477#1      GCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTT-------------- 485
consensus_477#2      GATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAA 468
                     * *                 * *      *     *   *   *                

consensus_477#0      TACGTGTACGG 548
consensus_477#1      -----------
consensus_477#2      AAAA------- 472

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)