These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_477#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [GTCCAATGGAAATTAGACAAGGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAAAAAAAAAAAAAAAAAAGCAACGCGGTGCACCGAACCTCCACCTCGCGGCAATTCATTCAACTTCTATTGCAATCTTGCTTCCTGAGGCGTCGTTTGATACGGTAGTCCTGGGAAGGCTGCGCCTGCCGCTGTTGCAGCTGCAGCCGCTGCTGCTGGTAATCCTGCCGCTGCACCTGGTAGCGTTGCATACGTGTACGG] [+] EMBL BI509880 [GTCCAATGGAAATTAGACAAGGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAAAAAAAAAAAAAAAAAAGCAACGCGGTGCACCGAACCTCCACCTCGCGGCAATTCATTCAACTTCTATTGCAATCTTGCTTCCTGAGGCGTCGTTTGATACGGTAGTCCTGGGAAGGCTGCGCCTGCCGCTGTTGCAGCTGCAGCCGCTGCTGCTGGTAATCCTGCCGCTGCACCTGGTAGCGTTGCATACGTGTACGG] consensusID : consensus_477#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [GGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAGAAAAGAAGAAGAAAATAAAAGAACGATCGAATCGGGGTCCGTGAACATAAGCACGTTGCAAATATAAAACGCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTT] [+] EMBL BI505430 [GGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCCTTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAACAAGTGCCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAATAGACGCGATATGTGAAAACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAACATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACCTCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAGAAAAGAAGAAGAAAATAAAAGAACGATCGAATCGGGGTCCGTGAACATAAGCACGTTGCAAATATAAAACGCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTT] consensusID : consensus_477#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 472 fasta sequence [GCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCTTGTAGATATGTGAAACACATTGTTGACGAAAAAAGTTTTTTCTAAATAACAGTTTAACGTAGCATTGCGTACGACCAATAGGCACGTCACGACGTTACTCGAGATGTGCCGTTAGTAATAAATAGGCATTGTAATGTAAAGTACGTTCTTATTGTAAGAATTAACAAGAGATCGTATGAGTCTGATTATTGTTGGTGAACAAATACGAGATCCGCTCGAAGATTTCGAGCATTCTCCATGAATCATCTTTGGTCTTGCTTCGAAGACCTTCGAAACGATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAAAAAA] [+] EMBL BI507138 [GCGAATCAAACGTGTTTTCAAAACTGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCTTGTAGATATGTGAAACACATTGTTGACGAAAAAAGTTTTTTCTAAATAACAGTTTAACGTAGCATTGCGTACGACCAATAGGCACGTCACGACGTTACTCGAGATGTGCCGTTAGTAATAAATAGGCATTGTAATGTAAAGTACGTTCTTATTGTAAGAATTAACAAGAGATCGTATGAGTCTGATTATTGTTGGTGAACAAATACGAGATCCGCTCGAAGATTTCGAGCATTCTCCATGAATCATCTTTGGTCTTGCTTCGAAGACCTTCGAAACGATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAAAAAA] [+] EMBL BI503952 [ CGCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCTTGTAGATATGTGAAACACATTGTTGACGAAAAAAGTTTTTTCTAAATAACAGTTTAACGTAGCATTGCGTACGACCAATAGGCACGTCACGACGTTACTCGAGATGTGCCGTTAGTAATAAATAGGCATTGTAATGTAAAGTACGTTCTTATTGTAAGAATTAACAAGAGATCGTATGAGTCTGATTATTGTTGGTGAACAAATACGAGATCCGCTCGAAGATTTCGAGCATTCTCCATGAATCATCTTTGGTCTTGCTTCGAAGACCTTCGAAACGATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_477#0 GTCCAATGGAAATTAGACAAGGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCC 60 consensus_477#1 --------------------GGGAGAAAAGAAAAAAATGGAAGGGTGATTCCTCCCACCC 40 consensus_477#2 --------------------------------------------GCGAATCAAAC-GTGT 15 * ** ** * consensus_477#0 TTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAA 120 consensus_477#1 TTTCGGAACAAACGATAGAAAAATAGAATAACGTCCAAGACGGCGAACTTTTCGTTCGAA 100 consensus_477#2 TTTCAAAAC---TGAAAAGCGAATCGCGCTGCAACGAGGAGATGTAATACTACGTATAAA 72 **** *** ** * *** * * * * ** ** * *** ** consensus_477#0 CAAGTG--CCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAAT 178 consensus_477#1 CAAGTG--CCGTAAAGAAATGGAGGATACGAAACCTCAGGTATTGGAGAGTGTTCTGAAT 158 consensus_477#2 TATATAGACCCTTGTGAGAGACGACGTTTTAGGCCGTTTGTTTGGGAAGACGAGTTTTCT 132 * * ** * ** * * * ** ** * *** * * * consensus_477#0 AGACGCGATATGTGAAA-ACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAA 237 consensus_477#1 AGACGCGATATGTGAAA-ACAGTGCTGCCAGTACGCAATATATTTGGTAAATATTCGTAA 217 consensus_477#2 TGTAG--ATATGTGAAACACATTGTTGACGAAA---AAAGTTTTTTCTAAATAACAGTTT 187 * * ********** *** ** ** * * ** * *** ****** ** consensus_477#0 CATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACC 297 consensus_477#1 CATAAGGAAAGGAGAACGAAGTTGAAATAGTCGTAAAAATGTATCCAGCGCGATTAAACC 277 consensus_477#2 AACGTAGCATTGCGTACGA--CCAATAGGCACGTCACGACGTTACT--CGAGAT-GTGCC 242 * * * * * **** * * *** * * ** * ** *** ** consensus_477#0 TCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAAAAAAAAA 357 consensus_477#1 TCGACCTATGGATGGATTCACAAAAGAAGAGGAAGCAGCTTAACTGTGAATAGAAAAGAA 337 consensus_477#2 GTTAGTAATAAATAGGCATTGTAATGTAAAGTACGT--TCTTATTGTAAGAATTAACAAG 300 * ** ** * ** * * ** * * * * *** * * ** * consensus_477#0 AAAAAAAAAGCAACGCGGTGCACCGAACCTCCACCTCGCGGCAATTCATTCAACTTCTAT 417 consensus_477#1 GAAGAAAATAAAA---GAACGATCGAATCGGGGTC-CGTGAACATAAGCACGTTGCAAAT 393 consensus_477#2 AGATCGTATGAGTC--TGATTATTGTTGGTGAACAAATACGAGATCCGCTCGA---AGAT 355 * * * * ** * ** consensus_477#0 TGCAATCTTGCTTCCTGAGGCGTCGTTTGATACGGTAGTCCTGGGAAGGCTGCGCCTGCC 477 consensus_477#1 ATAAAACGCGAATC---AAACGTGTTTT-------CAAAACTGAAAAG----CGAATCGC 439 consensus_477#2 TTCGAGCATTCTCCATGAATCATCTTTGGT-----CTTGCTTCGAAGACCTTCGAA--AC 408 * * * * * * ** * * ** * consensus_477#0 GCTGTTGCAGCTGCAGCCGCTGCTGCTGGTAATCCTGCCGCTGCACCTGGTAGCGTTGCA 537 consensus_477#1 GCTGCAACGAGGAGATGTAATACTACGTATAAATATATAGACCCTT-------------- 485 consensus_477#2 GATATATAGATGTTTACTTATACAAGAAATCGATATTCCGTTCCATTGAAGAAGGTAAAA 468 * * * * * * * * consensus_477#0 TACGTGTACGG 548 consensus_477#1 ----------- consensus_477#2 AAAA------- 472 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |