These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 906 fasta sequence [CTCCACCCACGATATCGCGAAATGTTGTCGCGATTACGAGGTCCCCAAAAAATCCTGAAAAGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACGACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACAGGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTCCTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAGAATTCCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCTGATCTTAGCGTAGATTTACCACGACACAAATGATGAAACTGTTATATTATTAATGAAAAAAATTTATAAAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTTGTATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATTA-A--CAAAGCAAAACCTGTGAAATTGATATTAGAACATATAATTTCAATTTC-GC-ATGAAATGTGAAAAAGTAAATG--TTATTAAATTATAAAATAAAGTTCTGTAAAATGTAAAATGAAATTA] [-] EMBL BQ103814 [CTCCACCCACGATATCGCGAAATGTTGTCGCGATTACGAGGTCCCCAAATCATCCTG AAAGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACGACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACAGGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTCCTAACCAAGGACCTGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAGAATTCCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCTGATCTTAGCGTAGATTTACCCCGACACAAATGATGAAACTGTTATATTATTAATGAAAAAAATTTATAAAAAAAAAAAAGAAGGAAAT ATTAATCTTTATATTAAAATTTATATAATTTTTGTATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATTTTATATTCAAAACAAAACCTGTGAAATTGATATTAAAACATATAATTTCAATTTCTGCTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAATTCTGTAAAATATAAAATGAAATTA] [+] EMBL BI511720 [ cAAATCCTGAAAAGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACGACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACAGGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTNNNAAGGATTATGACCCTCTTGTCTCCTATGGGAAACCTGACGGTTCGCAGTCCTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTT ] [-] EMBL BQ103765 [ AGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTCCTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAGAATT CAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCTGATCTTAGCGTAGATTTACCACGACACAAATGATGAAACTGTTATATTATTAATGAAAAAAATTTAT ATAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTTATATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATT CAGCAAAACCTGTGAAATTGATATTAGAACATATAATTTCAATTTC TGAAATGTGAAAAAGTAAATG TT TTAAATTATAAAATAAAGTTCTGTAAAATGTAAAATGAA ] consensusID : consensus_484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [GGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAAAATTCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCCGATCTTAGCATAGATTTACCACGACACAAATGATGAAACTGTTATACTATTAATGAAAAAAATTTATAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTCATATAAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATTTATTATTCAGCAAAACCTGTGAAATTGATATTAGAATATATAATTTCAATTTCTGGTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAGTTTTGTAAAATTCTGTAATCTGTAAAATGAAATTAAAGGTTAAAGAAATGAAATTCTGATTCGCTTAACATTCTATGTTCATATCAATGGAATAGAATAAATAAAAACTAGAACATTGTTGAAAATT] [-] EMBL BQ103813 [GGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAAAATTCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCCGATCTTAGCATAGATTTACCACGACACAAATGATGAAACTGTTATACTATTAATGAAAAAAATTTATAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTCATATAAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATTTATTATTCAGCAAAACCTGTGAAATTGATATTAGAATATATAATTTCAATTTCTGGTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAGTTTTGTAAAATTCTGTAATCTGTAAAATGAAATTAAAGGTTAAAGAAATGAAATTCTGATTCGCTTAACATTCTATGTTCATATCAATGGAATAGAATAAATAAAAACTAGAACATTGTTGAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_484#0 CTCCACCCACGATATCGCGAAATGTTGTCGCGATTACGAGGTCCCCAAAAAATCCTGAAA 60 consensus_484#1 ------------------------------------------------------------ consensus_484#0 AGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACG 120 consensus_484#1 ------------------------------------------------------------ consensus_484#0 ACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACA 180 consensus_484#1 ------------------------------------------------------------ consensus_484#0 GGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAG 240 consensus_484#1 ------------------------------------------------------------ consensus_484#0 CTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAAT 300 consensus_484#1 ------------------------------------------------------------ consensus_484#0 CGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGAT 360 consensus_484#1 ------------------------------------------------------------ consensus_484#0 GCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTC 420 consensus_484#1 ------------------------------------------------------------ consensus_484#0 CTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTT 480 consensus_484#1 --------------------------------------------------GGTTCTCTTT 10 ********** consensus_484#0 GGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCG 540 consensus_484#1 GGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCG 70 ************************************************************ consensus_484#0 AGAATTCCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTT 600 consensus_484#1 AAAATTC-AGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTT 129 * ***** **************************************************** consensus_484#0 GCTGATCTTAGCGTAGATTTACCACGACACAAATGATGAAACTGTTATATTATTAATGAA 660 consensus_484#1 GCCGATCTTAGCATAGATTTACCACGACACAAATGATGAAACTGTTATACTATTAATGAA 189 ** ********* ************************************ ********** consensus_484#0 AAAAATTTATAAAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTT 720 consensus_484#1 AAAAATTTATAAAAAAAAAA--GAAGGAAATATTTATGATTAATCTTTATATTAAAATTT 247 ******************** ************************************** consensus_484#0 GTATAATTTTTGTATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATA 780 consensus_484#1 GTATAATTTTCATATAAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATA 307 ********** *** ******************************************** consensus_484#0 TATATTAACAA---AGCAAAACCTGTGAAATTGATATTAGAACATATAATTTCAATTTC- 836 consensus_484#1 TATATTTATTATTCAGCAAAACCTGTGAAATTGATATTAGAATATATAATTTCAATTTCT 367 ****** * * **************************** **************** consensus_484#0 -GCATGAAATGTGAAAAAGTAAATGTT--ATTAAATTATAAAATAAAGTTCTGTAAAAT- 892 consensus_484#1 GGTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAGTTTTGTAAAATT 427 * ************************ ********************* ******** consensus_484#0 ---------GTAAAATGAAATTA------------------------------------- 906 consensus_484#1 CTGTAATCTGTAAAATGAAATTAAAGGTTAAAGAAATGAAATTCTGATTCGCTTAACATT 487 ************** consensus_484#0 ------------------------------------------------------- consensus_484#1 CTATGTTCATATCAATGGAATAGAATAAATAAAAACTAGAACATTGTTGAAAATT 542 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |