These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 781 fasta sequence [GAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTTTTCGCACTATGAGCGAATTAGTTGCTATGCAAGGGCCTCTTACTGTTTTTTGTCATGGTGATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTTGTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGATCTTGCGAATTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGGTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAGATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAGAAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATGCTTTATAGATTGAATTATAAAAAATCTTTATAAATATTATTCTAGAAAATAATCTTTGTTATGTTATTATAAAGTAAATTAATTTTAATGTAATGTATTATTTAATATTTAATACGCGTTATATATACGCGTATTAAGAATTATACAAATTTCGATAAAAATTTGGCATTTTATATAATGCAA] [+] EMBL BI507709 [GAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTTTTCGCACTATGAGCGAATTAGTTGCTATGCAAGGGCCTCTTACTGTTTTTTGTCATGGTGATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTTGTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGATCTTGCGAATTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAATTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGGTCTCGCATTGGATATTTT ] [+] EMBL BI510413 [ ATGGTGATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTTGTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGATCTTGCGAATTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGNTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAGATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAGAAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATGCTTTATAGATTGAATTATAAAAAATCTTTATAAATATTATTC ] [-] EMBL BI509587 [ TACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACNNCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGGTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAGATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAGAAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATGCTTTATAGATTGAATTATAAAAAATCTTTATAAATATTATTCTAGAAAATAATCTTTGTTATGTTATTATAAAGTAAATTAATTTTAATGTAATGTATTATTTAATATTTAATACGCGTTATATATACGCGTATTAAGAATTATACAAATTTCGATAAAAATTTGGCATTTTATATAATGCAA] consensusID : consensus_486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [GTGGAAATTACCAGTTTGGAAGAAGAATTCGGTTCAGGAAGAGGTGACAATTATACATCTATGTTGTATCGTATTCGAGCAAAAGGTCGAAAACAGATAAAAAATAATGAATGGATCAATTATGAATGTGCAATAATTTATAAAGTTTTACCCCAATCAAGAGAACATCGTGAAGCTTTTAAAAGTGAACTACTATTTCAAAACGAAGTAGCATTTTATACGCATGTATGGCCTGCATTAAATAAGTTACAAACAAATGGTAGAAAAGTTTTTAACGGCGTTGCAAAAATATATGCAGCACAAATTGATTTTATCGCTATGGAAGATTTACGAGAAAGAGGTTTTAAAATGGCAGATAGAAGAAAAGGACTGCAACTTGAGCATTTGAAACGAACATTGAAAGCTTTAGCAGGTTTTCATGCACTGAGTTTAACTCTTAGAGAAACAAGGCCAGAAGAATTTGCAAGACTGACAGATCCAAGTGAAGGTAAAGGTATTCAAGAAGCACTTTTTCGAACAGAAAATGAAAATTGGTACCGTCAATACTATCAAGTTGCTGCTANGAATGCTATTAGAATGGTATCTGATGGTCTTCCTCCTCAAATGGAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTT] [+] EMBL BI507978 [GTGGAAATTACCAGTTTGGAAGAAGAATTCGGTTCAGGAAGAGGTGACAATTATACATCTATGTTGTATCGTATTCGAGCAAAAGGTCGAAAACAGATAAAAAATAATGAATGGATCAATTATGAATGTGCAATAATTTATAAAGTTTTACCCCAATCAAGAGAACATCGTGAAGCTTTTAAAAGTGAACTACTATTTCAAAACGAAGTAGCATTTTATACGCATGTATGGCCTGCATTAAATAAGTTACAAACAAATGGTAGAAAAGTTTTTAACGGCGTTGCAAAAATATATGCAGCACAAATTGATTTTATCGCTATGGAAGATTTACGAGAAAGAGGTTTTAAAATGGCAGATAGAAGAAAAGGACTGCAACTTGAGCATTTGAAACGAACATTGAAAGCTTTAGCAGGTTTTCATGCACTGAGTTTAACTCTTAGAGAAACAAGGCCAGAAGAATTTGCAAGACTGACAGATCCAAGTGAAGGTAAAGGTATTCAAGAAGCACTTTTTCGAACAGAAAATGAAAATTGGTACCGTCAATACTATCAAGTTGCTGCTANGAATGCTATTAGAATGGTATCTGATGGTCTTCCTCCTCAAATGGAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_486#0 GAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTT 60 consensus_486#1 ---GTGGAAATTACCAGTTTGGAAGAAGAATTCGGTTCAGGAAGAGGTGACAAT-TATAC 56 * *** * * * *** **** * ** *** ** *** consensus_486#0 TTTCGCACTATGAGCGAATTAGTTGCTATGCAAGGGCCTCTTACTGTTTTTTGTCATGGT 120 consensus_486#1 ATCTATGTTGTATCGTATTCGAGCAAAAGGTCGAAAACAGATAAAAAATAATGAATGGAT 116 * * * * * * * * ** * ** * * consensus_486#0 GATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTT 180 consensus_486#1 CAATTATGAATGTGCAATAATTTAT-----AAAGTTTTACCCCAATCAAGAGAACATCGT 171 * * ** * **** ***** * * *** * ****** ** * * consensus_486#0 GTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGAT-CTTGCGAA 239 consensus_486#1 GAAGCTTTTAAAAGTGAACTACTATTTCAAAACGA---AGTAGCATTTTATACGCATGTA 228 * *** * * * **** ** * * * * ** ** ** * * * consensus_486#0 TTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCA 299 consensus_486#1 TGGCCTGCATTAAATAAGTTACAAACAAATGGTAGAAAAGTTTTTAACGGCGTTGCAAAA 288 * ** * * * **** * * * * ** * * * consensus_486#0 ACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAA 359 consensus_486#1 ATATATGCAGCACAAATTGATTTTATCGCTATGGAAGATTTACGAGAAAGAGGTTTTAAA 348 * ** ** * * * ** * ** ** * * ** * *** ** *** consensus_486#0 AGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGA-TGTGGCCGATTTG 418 consensus_486#1 ATGGC-AGATAGAAGAAAAGGACTGCAACTTGAGCATTTGAAACGAACATTGAAAGCTTT 407 * * * * ** * *** * *** * ** **** * * ** consensus_486#0 GCGTAGGTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAG 478 consensus_486#1 A-GCAGGTTTT-CATGCACTGAGTT--TAACTCTTAGAGAAACAAGGCCAGAAG-----A 458 * **** * *** * ** ** * ** * *** ***** consensus_486#0 ATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAG 538 consensus_486#1 ATTTGCAAGACTGA-CAGATCCAAGTGAAGGTAAAGGTATTCAAGAAGCACTTTTTCGAA 517 **** * ** * ** * * * * **** ** * * * * ***** *** consensus_486#0 AAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATG 598 consensus_486#1 CAGAAAATGAA--------AATTGGTACCGTCAATACTATCAAGTTGCTGC-TANGAATG 568 ** * **** * ** ** * * * * * *** ** *** consensus_486#0 CTTTATAGATTGAATT--ATAAAAAATCTTTATAAATATTATTCTAGAAAATAATCTTTG 656 consensus_486#1 CTATTAGAATGGTATCTGATGGTCTTCCTCCTCAAATGGAATTC---AAAAGAATCGAAA 625 ** * ** * ** ** ** **** **** **** **** consensus_486#0 TTATGTTATTATAAAGTAAATTAATTTTAATG-TAATGTATTATTTAATATTTAATACGC 715 consensus_486#1 TAATGGAAAAATTACGAGCATT--TCTTAATGATGATGTATTTT---------------- 667 * *** * ** * * *** * ****** * ******* * consensus_486#0 GTTATATATACGCGTATTAAGAATTATACAAATTTCGATAAAAATTTGGCATTTTATATA 775 consensus_486#1 ------------------------------------------------------------ consensus_486#0 ATGCAA 781 consensus_486#1 ------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |