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Apis mellifera
cluster # 486 cluster # 486       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_486#0 length = 781 sequences # 3  
consensus_486#1 length = 667 sequences # 1  

consensusID : consensus_486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 781
fasta sequence
                              [GAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTTTTCGCACTATGAGCGAATTAGTTGCTATGCAAGGGCCTCTTACTGTTTTTTGTCATGGTGATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTTGTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGATCTTGCGAATTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGGTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAGATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAGAAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATGCTTTATAGATTGAATTATAAAAAATCTTTATAAATATTATTCTAGAAAATAATCTTTGTTATGTTATTATAAAGTAAATTAATTTTAATGTAATGTATTATTTAATATTTAATACGCGTTATATATACGCGTATTAAGAATTATACAAATTTCGATAAAAATTTGGCATTTTATATAATGCAA]

[+] EMBL BI507709             [GAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTTTTCGCACTATGAGCGAATTAGTTGCTATGCAAGGGCCTCTTACTGTTTTTTGTCATGGTGATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTTGTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGATCTTGCGAATTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAATTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGGTCTCGCATTGGATATTTT                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI510413             [                                                                                                                   ATGGTGATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTTGTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGATCTTGCGAATTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGNTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAGATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAGAAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATGCTTTATAGATTGAATTATAAAAAATCTTTATAAATATTATTC                                                                                                                                             ]
[-] EMBL BI509587             [                                                                                                                                                                                                                                                      TACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACNNCTTCAACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAAGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGCGTAGGTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAGATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAGAAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATGCTTTATAGATTGAATTATAAAAAATCTTTATAAATATTATTCTAGAAAATAATCTTTGTTATGTTATTATAAAGTAAATTAATTTTAATGTAATGTATTATTTAATATTTAATACGCGTTATATATACGCGTATTAAGAATTATACAAATTTCGATAAAAATTTGGCATTTTATATAATGCAA]


>consensus_486#0 GAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTT TTTCGCACTATGAGCGAATTAGTTGCTATGCAAGGGCCTCTTACTGTTTTTTGTCATGGT GATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTT GTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGATCTTGCGAAT TTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCAA CATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAAA GATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGATGTGGCCGATTTGGC GTAGGTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAGAT TTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAGAA GGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATGCT TTATAGATTGAATTATAAAAAATCTTTATAAATATTATTCTAGAAAATAATCTTTGTTAT GTTATTATAAAGTAAATTAATTTTAATGTAATGTATTATTTAATATTTAATACGCGTTAT ATATACGCGTATTAAGAATTATACAAATTTCGATAAAAATTTGGCATTTTATATAATGCA A



consensusID : consensus_486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence
                              [GTGGAAATTACCAGTTTGGAAGAAGAATTCGGTTCAGGAAGAGGTGACAATTATACATCTATGTTGTATCGTATTCGAGCAAAAGGTCGAAAACAGATAAAAAATAATGAATGGATCAATTATGAATGTGCAATAATTTATAAAGTTTTACCCCAATCAAGAGAACATCGTGAAGCTTTTAAAAGTGAACTACTATTTCAAAACGAAGTAGCATTTTATACGCATGTATGGCCTGCATTAAATAAGTTACAAACAAATGGTAGAAAAGTTTTTAACGGCGTTGCAAAAATATATGCAGCACAAATTGATTTTATCGCTATGGAAGATTTACGAGAAAGAGGTTTTAAAATGGCAGATAGAAGAAAAGGACTGCAACTTGAGCATTTGAAACGAACATTGAAAGCTTTAGCAGGTTTTCATGCACTGAGTTTAACTCTTAGAGAAACAAGGCCAGAAGAATTTGCAAGACTGACAGATCCAAGTGAAGGTAAAGGTATTCAAGAAGCACTTTTTCGAACAGAAAATGAAAATTGGTACCGTCAATACTATCAAGTTGCTGCTANGAATGCTATTAGAATGGTATCTGATGGTCTTCCTCCTCAAATGGAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTT]

[+] EMBL BI507978             [GTGGAAATTACCAGTTTGGAAGAAGAATTCGGTTCAGGAAGAGGTGACAATTATACATCTATGTTGTATCGTATTCGAGCAAAAGGTCGAAAACAGATAAAAAATAATGAATGGATCAATTATGAATGTGCAATAATTTATAAAGTTTTACCCCAATCAAGAGAACATCGTGAAGCTTTTAAAAGTGAACTACTATTTCAAAACGAAGTAGCATTTTATACGCATGTATGGCCTGCATTAAATAAGTTACAAACAAATGGTAGAAAAGTTTTTAACGGCGTTGCAAAAATATATGCAGCACAAATTGATTTTATCGCTATGGAAGATTTACGAGAAAGAGGTTTTAAAATGGCAGATAGAAGAAAAGGACTGCAACTTGAGCATTTGAAACGAACATTGAAAGCTTTAGCAGGTTTTCATGCACTGAGTTTAACTCTTAGAGAAACAAGGCCAGAAGAATTTGCAAGACTGACAGATCCAAGTGAAGGTAAAGGTATTCAAGAAGCACTTTTTCGAACAGAAAATGAAAATTGGTACCGTCAATACTATCAAGTTGCTGCTANGAATGCTATTAGAATGGTATCTGATGGTCTTCCTCCTCAAATGGAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTTT]


>consensus_486#1 GTGGAAATTACCAGTTTGGAAGAAGAATTCGGTTCAGGAAGAGGTGACAATTATACATCT ATGTTGTATCGTATTCGAGCAAAAGGTCGAAAACAGATAAAAAATAATGAATGGATCAAT TATGAATGTGCAATAATTTATAAAGTTTTACCCCAATCAAGAGAACATCGTGAAGCTTTT AAAAGTGAACTACTATTTCAAAACGAAGTAGCATTTTATACGCATGTATGGCCTGCATTA AATAAGTTACAAACAAATGGTAGAAAAGTTTTTAACGGCGTTGCAAAAATATATGCAGCA CAAATTGATTTTATCGCTATGGAAGATTTACGAGAAAGAGGTTTTAAAATGGCAGATAGA AGAAAAGGACTGCAACTTGAGCATTTGAAACGAACATTGAAAGCTTTAGCAGGTTTTCAT GCACTGAGTTTAACTCTTAGAGAAACAAGGCCAGAAGAATTTGCAAGACTGACAGATCCA AGTGAAGGTAAAGGTATTCAAGAAGCACTTTTTCGAACAGAAAATGAAAATTGGTACCGT CAATACTATCAAGTTGCTGCTANGAATGCTATTAGAATGGTATCTGATGGTCTTCCTCCT CAAATGGAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGAT GTATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_486#0      GAATTCAAAAGAATCGAAATAATGGAAAAATTACGAGCATTTCTTAATGATGATGTATTT 60
consensus_486#1      ---GTGGAAATTACCAGTTTGGAAGAAGAATTCGGTTCAGGAAGAGGTGACAAT-TATAC 56
                         *  ***  * *    *    *** ****  *  **        ***  ** ***  

consensus_486#0      TTTCGCACTATGAGCGAATTAGTTGCTATGCAAGGGCCTCTTACTGTTTTTTGTCATGGT 120
consensus_486#1      ATCTATGTTGTATCGTATTCGAGCAAAAGGTCGAAAACAGATAAAAAATAATGAATGGAT 116
                      *      * *     * *        * *       *   **     *  **    * *

consensus_486#0      GATTGTTGGACTAATAATATTTTATTTAGAGATGATTTGACTAAATCAAATGAGGAAGTT 180
consensus_486#1      CAATTATGAATGTGCAATAATTTAT-----AAAGTTTTACCCCAATCAAGAGAACATCGT 171
                      * *  ** *     **** *****      * * ***  *  ******  **  *   *

consensus_486#0      GTCTATTTAATTGATTTTCAACTAACTCGAGTTGGTTCACTTGCCCTTGAT-CTTGCGAA 239
consensus_486#1      GAAGCTTTTAAAAGTGAACTACTATTTCAAAACGA---AGTAGCATTTTATACGCATGTA 228
                     *    *** *    *   * ****  ** *   *    * * **  ** ** *    * *

consensus_486#0      TTTGTTGTACTGTTGTGCAAGTGGAGAAATTAGACGAGCGCACATGACACAACTTCTTCA 299
consensus_486#1      TGGCCTGCATTAAATAAGTTACAAACAAATGGTAGAAAAGTTTTTAACGGCGTTGCAAAA 288
                     *    ** * *             * ****   *  *  *    * **     * *   *

consensus_486#0      ACATTATCATTTCCATCTAATGTCTTCATTACATACGCTTAATCCAAAACAGCCACCAAA 359
consensus_486#1      ATATATGCAGCACAAATTGATTTTATCGCTATGGAAGATTTACGAGAAAGAGGTTTTAAA 348
                     * **   **   * *  * ** *  **  **   * * ** *    *** **     ***

consensus_486#0      AGATCCATCTGTAATGTGGGAACTATTAAATGAAGAAATGCGACGA-TGTGGCCGATTTG 418
consensus_486#1      ATGGC-AGATAGAAGAAAAGGACTGCAACTTGAGCATTTGAAACGAACATTGAAAGCTTT 407
                     *   * *  *  **     * ***   *  ***  *  **  ****   * *     ** 

consensus_486#0      GCGTAGGTCTCGCATTGGATATTTTACCAATTAGTACATGCGAAAGTGAAGAAGCTCCAG 478
consensus_486#1      A-GCAGGTTTT-CATGCACTGAGTT--TAACTCTTAGAGAAACAAGGCCAGAAG-----A 458
                       * **** *  ***    *   **   ** *  ** *     ***   *****      

consensus_486#0      ATTTATATGAAAAATCAAAAACCAATAAAGGAAAGGAAAATACACGAGCACCACCACGAG 538
consensus_486#1      ATTTGCAAGACTGA-CAGATCCAAGTGAAGGTAAAGGTATTCAAGAAGCACTTTTTCGAA 517
                     ****  * **   * ** *  * * * **** ** *  * *  *  *****     *** 

consensus_486#0      AAGGAGCTGAATGTGCTCGACTTATGACTGATTTAGTTTTGGAACTTGTGCATAATCATG 598
consensus_486#1      CAGAAAATGAA--------AATTGGTACCGTCAATACTATCAAGTTGCTGC-TANGAATG 568
                      ** *  ****        * **   ** *       * *  *  *  *** **   ***

consensus_486#0      CTTTATAGATTGAATT--ATAAAAAATCTTTATAAATATTATTCTAGAAAATAATCTTTG 656
consensus_486#1      CTATTAGAATGGTATCTGATGGTCTTCCTCCTCAAATGGAATTC---AAAAGAATCGAAA 625
                     ** *    ** * **   **       **    ****   ****   **** ****    

consensus_486#0      TTATGTTATTATAAAGTAAATTAATTTTAATG-TAATGTATTATTTAATATTTAATACGC 715
consensus_486#1      TAATGGAAAAATTACGAGCATT--TCTTAATGATGATGTATTTT---------------- 667
                     * ***  *  ** * *   ***  * ****** * ******* *                

consensus_486#0      GTTATATATACGCGTATTAAGAATTATACAAATTTCGATAAAAATTTGGCATTTTATATA 775
consensus_486#1      ------------------------------------------------------------
                                                                                 

consensus_486#0      ATGCAA 781
consensus_486#1      ------
                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)