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Apis mellifera
cluster # 498 cluster # 498       Sequences # 4       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_498#0 length = 688 sequences # 2  
 consensus_498#1 length = 600 sequences # 1  
consensus_498#2 length = 421 sequences # 1  
consensusID : consensus_498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence 
                              [TCGAACAATGGAGAGGAGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA]

[+] EMBL BI505681             [TCGAACAATGGAGAGGAGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA]
[+] EMBL BI506858             [                        ACCGTATTATTGAATTATTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT                                                                                                                           ]




>consensus_498#0
TCGAACAATGGAGAGGAGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTC
TCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATAATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATA

consensusID : consensus_498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence 
                              [TTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATAAAAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGATACATCGAACTAAATACGTAGGAATTTTTACTAAATCGTCAAAAGATCATTTCGATTCTCTTCTACTACCGTAAGAAAAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCCATCGATCCCTCCGTTTGAAGAAACGCTTGAAAAATAACGGAGAGAACGCACGTTTTGCATCGACATTCAGCGAAATTTTGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAAGGGTTTCGACCAATAAACGTCGAATTCTAGCAATAGCGGTGTCGTTGTTCCGTATTCTCGTAGCTCGTGCCAATAAACGAAAACGAAAAAGATAGAACGAAGAAAGATTAAAATGGACCGAAATGTATTCACGATCGAAAGATAGAAAAAGAGAAAGAGAATGAGAATGAGAACGAAGAGAGAATCTGTTCGAAAAAGAGAAAACGAGCACGTGTAAAAATTATCGCATAACTTTGACTTGGA]

[+] EMBL BI503767             [TTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATAAAAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGATACATCGAACTAAATACGTAGGAATTTTTACTAAATCGTCAAAAGATCATTTCGATTCTCTTCTACTACCGTAAGAAAAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCCATCGATCCCTCCGTTTGAAGAAACGCTTGAAAAATAACGGAGAGAACGCACGTTTTGCATCGACATTCAGCGAAATTTTGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAAGGGTTTCGACCAATAAACGTCGAATTCTAGCAATAGCGGTGTCGTTGTTCCGTATTCTCGTAGCTCGTGCCAATAAACGAAAACGAAAAAGATAGAACGAAGAAAGATTAAAATGGACCGAAATGTATTCACGATCGAAAGATAGAAAAAGAGAAAGAGAATGAGAATGAGAACGAAGAGAGAATCTGTTCGAAAAAGAGAAAACGAGCACGTGTAAAAATTATCGCATAACTTTGACTTGGA]




>consensus_498#1
TTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTA
TATATATATATATATAAAAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGA
TACATCGAACTAAATACGTAGGAATTTTTACTAAATCGTCAAAAGATCATTTCGATTCTC
TTCTACTACCGTAAGAAAAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCCA
TCGATCCCTCCGTTTGAAGAAACGCTTGAAAAATAACGGAGAGAACGCACGTTTTGCATC
GACATTCAGCGAAATTTTGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAAGGG
TTTCGACCAATAAACGTCGAATTCTAGCAATAGCGGTGTCGTTGTTCCGTATTCTCGTAG
CTCGTGCCAATAAACGAAAACGAAAAAGATAGAACGAAGAAAGATTAAAATGGACCGAAA
TGTATTCACGATCGAAAGATAGAAAAAGAGAAAGAGAATGAGAATGAGAACGAAGAGAGA
ATCTGTTCGAAAAAGAGAAAACGAGCACGTGTAAAAATTATCGCATAACTTTGACTTGGA

consensusID : consensus_498#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence 
                              [AGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGAGTGTAACTCAATTAAAATGATATATATATATATATATATATATATATATATATATAAAAAAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGATACATCGAACTAAATACGTAGGAATTTTTACTAAATCGTCAAAAGATCATTTCGATTCTCTTCTACTACCGTAAGAAAAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCCATCGATCCCTCCGTTTGAAGAAACGCTTGAAAAATAACGGAGAGAACGCACGTTTTGCATCGACATTCAGCGAAATTTTGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAAGGGTTTCGACCAATAAACGTC]

[+] EMBL BI516616             [AGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTCTCCACAGATAGAGAGGAGTGTAACTCAATTAAAATGATATATATATATATATATATATATATATATATATATAAAAAAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGATACATCGAACTAAATACGTAGGAATTTTTACTAAATCGTCAAAAGATCATTTCGATTCTCTTCTACTACCGTAAGAAAAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCCATCGATCCCTCCGTTTGAAGAAACGCTTGAAAAATAACGGAGAGAACGCACGTTTTGCATCGACATTCAGCGAAATTTTGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAAGGGTTTCGACCAATAAACGTC]




>consensus_498#2
AGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTCTCCACAGATAGAGAGG
AGTGTAACTCAATTAAAATGATATATATATATATATATATATATATATATATATATAAAA
AAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGATACATCGAACTAAATAC
GTAGGAATTTTTACTAAATCGTCAAAAGATCATTTCGATTCTCTTCTACTACCGTAAGAA
AAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCCATCGATCCCTCCGTTTGA
AGAAACGCTTGAAAAATAACGGAGAGAACGCACGTTTTGCATCGACATTCAGCGAAATTT
TGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAAGGGTTTCGACCAATAAACGT
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_498#1      -----------------------------------------TTTGAAATAATCGGTCGTC 19
consensus_498#2      ----------------AGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTC 44
consensus_498#0      TCGAACAATGGAGAGGAGAAAAATACCGTATTATTGAATTATTTGAAATAATCGGTCGTC 60
                                                              *******************

consensus_498#1      TCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATA--- 76
consensus_498#2      TCCACAGATAGAGAGGAGTGTAACTCAATTAAAATGATATATATATATATATATATATAT 104
consensus_498#0      TCCACAGATAGAGAGGGGTGTAACTCAATTAAAATGATTTATATATATATATATATA-AT 119
                     **************** ********************* ******************   

consensus_498#1      ---------------AAAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGAT 121
consensus_498#2      ATATATATATATAAAAAAAAAAAAAGAAAAAGATACTCGAAGATAAACGTGCTAAACGAT 164
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 179
                                     * * * * * * * * ***     * *** *  *    *   **

consensus_498#1      ACATCGAACTAAATACGTAGGAATTTTTACTAAATCGTCAAAAGAT-CATTTCGATTCTC 180
consensus_498#2      ACATCGAACTAAATACGTAGGAATTTTTACTAAATCGTCAAAAGAT-CATTTCGATTCTC 223
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 239
                     * **  *  ** ***  **   ** * **   *    *  * * **  ** *  **    

consensus_498#1      TTCTACTACCGTA-AGAAAAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCC 239
consensus_498#2      TTCTACTACCGTA-AGAAAAGTATTTTCGCGACTCTACACTTGCTGCTTCGTCGCGATCC 282
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 299
                      * **      ** * * *  *** *       * ** *  *     *   *    **  

consensus_498#1      ATCGATCCCTCCGTTTGAAGAAACGCTTGAAAAATAACGGAGAGA-ACGCACGTTT-TGC 297
consensus_498#2      ATCGATCCCTCCGTTTGAAGAAACGCTTGAAAAATAACGGAGAGA-ACGCACGTTT-TGC 340
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 359
                     **  **   *   * *  * * *    *  * *   *   * * * *   *  * * *  

consensus_498#1      ATCGACATTCAGCGAAATTTTGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAA 357
consensus_498#2      ATCGACATTCAGCGAAATTTTGCTCGCGAGAAGAAGAAGAAAAAAGAGAAAAGAGAGAAA 400
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 419
                     **  * **  *   * ** *   *    * *   * *   * * * * * *       * 

consensus_498#1      GGGTTTCGACCAATAAACGTCGAATTCTAGCAATAGCGGTGTCGTTGTTCCGTATTCTCG 417
consensus_498#2      GGGTTTCGACCAATAAACGTC--------------------------------------- 421
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 479
                        * *  *   *** *  *                                        

consensus_498#1      TAGCTCGTGCCAATAAACGAAAACGAAAAAGATAGAACGAAGAAAGATTAAAATGGACCG 477
consensus_498#2      ------------------------------------------------------------
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 539
                                                                                 

consensus_498#1      AAATGTATTCACG-ATCGAAAGATAGAAAAAGAGAAAGAGAATGAGAATGAGAACGAAGA 536
consensus_498#2      ------------------------------------------------------------
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 599
                                                                                 

consensus_498#1      GAGAATCTGTTCGAAAAAGAGAAAACGAGCACGTGTAAAAATTATCGCATAACTTTGACT 596
consensus_498#2      ------------------------------------------------------------
consensus_498#0      ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 659
                                                                                 

consensus_498#1      TGGA------------------------- 600
consensus_498#2      -----------------------------
consensus_498#0      ATATATATATATATATATATATATATATA 688


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)