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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_50#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1072 fasta sequence
[AAAAAAAAATATTATGGAATATAAATCGTTCTTTCTTATATTGATAACTCTTATATTGATAAGATTGTATTATATGATATCATAATTAAATTACAGTTATTATTTTATTGCACGTAGATATCTATTTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATACTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTCGTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTCGTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAATATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATAAAATAAGTAACCCACATCATCGGCATGTGCAACTCCATCGCTGACACCATGTAAACTTTTCATAAAACCAGTTGGCGCCTCATAAGAAGAACAGATATTGATAAATAGGAGACGAAATTCGATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCATCCTGATATATTCCGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTTTTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGTAAAAATTGCTCTGGTTCCGTGTTCAATACATCGATTTTATCTATCATATTTTGCGCCATAAATGCACATTCATCGGCTGTAATTCCAGACATCACGGGCACATCCGCGATTCTTCCAGATTTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATCGATGGAACGAAAGCATTCGTATGCCCAGACAATACGTTCTGTTTCTTCATTATTTCGCTACTTGCTGCAGTGATATCTTCAACGT-GGAATTCGGTCAATTTTCTGACCAATTCCTCAGAATCTGTAGTTGTTATCCCCAAAGCTGCACCCAACATAAACGCTTGTTCCCTTG]
[-] EMBL BE844678 [AAAAAAAAATATTATGGAATATAAATCGTTCTTTCTTATATTGATAACTCTTATATTGATAAGATTGTATTATATGATATCATAATTAAATTACAGTTATTATTTTATTGCACGTAGATATCTATTTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATACTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTCGTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTCGTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAATATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATAAAATAAGTAACCCACATCATCGGCAT ]
[+] EMBL BE844464 [ TTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATACTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTCGTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTCGTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAATATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATAAAATAAGTAACCCACATCATCGGCATGTGCAACTCCATCGCTGACACCATGTAAACTTTTCATAAAACCAGTTGGCGCCTCATAAGAAGAACAGATATTGATAAATAGGAGACGAAATTCGATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCATCCTGATATATTCCGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTTTTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGTAAAAATTGCT ]
[-] EMBL BI502757 [ TATTGATAAATAGGAGACGAAATTCGATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCATCCTGATATATT CGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTTTTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGTAAAAATTGCTCTGGTTCCGTGTTCAATACATCGATTTTATCTATCATATTTTGCGCCATAAATGCACATTCATCGGCTGTAATTCCAGACATCACGGGCACATCCGCGATTCTTCCAGATTTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATCGATGGAACGAAAGCATTCGTATGCCCAGACAATACGTTCTGTTTCTTCATTATTTCGCTACTTGCTGCAATGATATCTTCAACGT GGAATTCGCTCAATTTTCTGACCAATTCCTCAGAATCTGTAGTTTTTATCCCCAAAGCTTCACCCAACATAAACGCTTGTTCCCTTG]
[+] EMBL BE844369 [ ATTCTTCCAGATTTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATCGATGGAACGAAAGCATTCGTATGCCCAGACAATACGTTCTGTTTCTTCATTATTTCGCTACTTGCTGCAGTGATATCTTCAACGTGGGAATTCGGTCAATTTTCTGACCAATTCCTCAGAATCTGTAGTTGTTATCCCCAAAGCTGCACCCAACATAAACGCTTGTTCCCTT ]
consensusID : consensus_50#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 757 fasta sequence
[CTGTTTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG-CGCTTGGATTTTTGAACACCGAGGATA-AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA-GAGTAACTATTTTCGGTGATAG-TTCAGGTGGTGCTTCTGTTCAGTATCACATGTTATCTCCCATGTCTGAAGGTTTGTTCAATGCTGCTATACAGCAAAGTGGGACAATACTTAATCCATGGGCGATAACTTATAATCCAAGGGAACAAGCGTTTATGTTGGGTGAAGCTTTGGGGA]
[+] EMBL BE844614 [CTGTTTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGG ]
[+] EMBL BE844579 [ TTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGTATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAGTTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACAGGAGTAACTATTTTCGGTGATAGTTTCAGGTGGTGCTTCTGTTCAG ]
[+] EMBL BE844388 [ TTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCAACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGACTTCTTGGTGGAGAAAGACGTGGCGCTCGTTACGTTTAACTTCAGGAACGGGGCCGCTTGGATTTTTGAACACCGAGGATATAAAGCGCTCCCGGAAATGCTGGTATGAAGG ]
[+] EMBL BE844525 [ CGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGACTTCTTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA GAGTAACTATTTTCGGTGATAG TTCA ]
[+] EMBL BI505859 [ GGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA GAGTAACTATTTTCGGTGATAG TTCAGGTGGTGCTTCTGTTCAGTATCACATGTTATCTCCCATGTCTGAAGGTTTATTCAATGCTGCTA ]
[+] EMBL BE844384 [ CAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCATTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA GAGTAACTATTTTCGGTGATAG TTCAGGTGGTGCTTCTGTTCAGTATCACATGTTATCTCCTATGTCTGAAGGTTTGTTCAATGCTGCTATACAGCAAAGTGGGACAATACTTAATCCATGGGCGATAACTTATAATCCAAGGGAACAAGCGTTTATGTTGGGTGAAGCTTTGGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_50#0 AAAAAAAAATATTATGGAATATAAATCGTTCTTTCTTATATTGATAACTCTTATATTGAT 60
consensus_50#1 ------------------------------------------------------------
consensus_50#0 AAGATTGTATTATATGATATCATAATTAAATTACAGTTATTATTTTATTGCACGTAGATA 120
consensus_50#1 ------------------------------------------------------------
consensus_50#0 TCTATTTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATA 180
consensus_50#1 ------------------------------------------------------------
consensus_50#0 CTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTC 240
consensus_50#1 -------------------------------------CTGTTTTATGGATTTGCGGTTGC 23
* ** * * * **** * *
consensus_50#0 GTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTC 300
consensus_50#1 CTGGGTTTGTGCCGAGCAGGACGTACAATTGAA-GATTCCTCAGGGTCTGTTGAAAGGT- 81
* * * * * * * ** * * *** * **** * *
consensus_50#0 GTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAAT 360
consensus_50#1 -TTGAAGACCGAAACAG----------TTTTTCACAACAAGCCC-TATTACAGTTTTAAG 129
* ** ** ** * *** ** ** * ** *** ** ***
consensus_50#0 ATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATA 420
consensus_50#1 GGC-ATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTC---AGATATCAGAAC- 184
*** *** * * * * **** *** ***** * ** * ***
consensus_50#0 AAATAAGTAACCCACATCATCGGCATGTGCAACTCCATCGCTGACACCATGTAAACTTTT 480
consensus_50#1 ---CAGCTGAACCATGGGAAGACCAAGTGTA-------CGATGCGACCATGCATCGTTCT 234
* * * *** * ** *** * ** ** ****** * ** *
consensus_50#0 CATAAAACCAGTTGGCGCCTCATAAGAAGAACAGATATTGATAAATAGGAGACGAAATTC 540
consensus_50#1 GCT--------TGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATT 286
* * ** ** ** * * ** *** ** ** ** *
consensus_50#0 GATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCA 600
consensus_50#1 GCCTCTATCTGA------ACGTTTATA---CTCCGGTTCTGGACAAAGAAGCGCGTAAAG 337
* *** * * ** * *** **** * * * *** * *** *
consensus_50#0 TCCTGATATATTCCGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTT 660
consensus_50#1 --CTGTTATG----GTATGGATT-TATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGAT 390
*** *** ** *** * * ** * *** * * * *
consensus_50#0 TTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGT 720
consensus_50#1 ATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGC--------TCGTTACGT 442
** * ** ***** ** * * * * ** **** **** **
consensus_50#0 AAAAATTGCTCTGGTTCCGTGTTCAATACATCGATTTTATCTATCATATTTTGCGCCATA 780
consensus_50#1 ----------TTAACTTCAGG---AACGGGGCGCTTGGATTT-TTGAACACCGAGG-ATA 487
* * * * ** ** ** ** * * * * * ***
consensus_50#0 AATGCACATTCATCGGCTGTAATTCCAGACATCACGGGCACATCCGCGATTCTTCCAGAT 840
consensus_50#1 AAAGCGCTCCC-------GGAAATGCTGGTATGAAGGAT-CAAGTGTTGGCGTTGAAATG 539
** ** * * * ** * * * ** * ** ** * ** *
consensus_50#0 TTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATC 900
consensus_50#1 GGTGAAGGATAATATACATTACTTTGGCGG--TTGCCCTAACAGAGTAACTATTTTCGGT 597
* * ** * ** * * ** ** * ** ** * * **
consensus_50#0 GATGGAACGAAAGCATTCGTATGCCCAG-ACAATACGTTCTGTTTCTTCATTATTTCGCT 959
consensus_50#1 GATAGTTCAGGTG-GTGCTTCTGTTCAGTATCACATGTTATCTCCCATGTCTGAAGGTTT 656
*** * * * * * * ** *** * * * *** * * * * * *
consensus_50#0 ACTTGCTGCAGTGATATCTTCAACGTGGAATTCGGTCAATTTTCTGACCAATTCCTCAGA 1019
consensus_50#1 GTTCAATGCTGCTATA-CAGCAAAGTGGGACAATACTTAATCCATGGGCGATAACTTATA 715
* *** * *** * *** **** * * * ** * ** ** * *
consensus_50#0 ATCTGTAGTTGTTATCCCCAAAGCTGCACCCAACATAAACGCTTGTTCCCTTG 1072
consensus_50#1 ATCCAAGGGAACAAGCGTTTATGTTGGGTGAAGCTTTGGGGA----------- 757
*** * * * * * ** * * * *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |