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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 813 fasta sequence
[TCGAAGATGCGAAATTATATATATTCACGGCATTCTCATGGTCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAGGTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACTAATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGTAGTTCTGGACCTTTGAAATAACGCGAGGCTACTCGTACATTATATTCTTGACCAGGGTGGTAAAATTCTGCTAGACCCCAATCGATTAACCGTAACTTTCGATTTTCATGGTCTATCATAACGTTGTGCGGTTTAACGTCCCTATGCATTATTCCCATACTATGGCAATAATCTAATGCTTTTAATAATTCGTAGAGGTAGTATCTTATGTCGTAGTCTGTTAGCGTCTGGTATAATTGCTT]
[+] EMBL BI510400 [TCGAAGATGCGAAATTATATATATTCACGGCATTCTCATGGTCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAGGTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACTAATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGA ]
[+] EMBL BI509541 [ ATGGTCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAGGTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACTAATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGTAGTT ]
[-] EMBL BI505094 [ GTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGTAGTTCTGGACCTTTGAAATAACGCGAGGCTACTCGTACATTATATTCTTGACCAGGGTGGTAAAATTCTGCTAGACCCCAATCGATTAACCGTAACTTTCGATTTTCATGGTCTATCATAACGTTGTGCGGTTTAACGTCCCTATGCATTATTCCCATACTATGGCAATAATCTAATGCTTTTAATAATTCGTAGAGGTAGTATCTTATGTCGTAGTCTGTTAGCGTCTGGTATAATTGCTT]
consensusID : consensus_513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[GAATACTTCATCGTTTTCTGAGTCCCATTTCCAACTTGTCCCACCATATTTTTCAGTCGGTTTATTCCACGNNCCGGTACGCTGCTCACAGTCACGCTTAGGGATGGGATTAAGCCCCTCGCGCGAAGTATCGATACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCAC]
[-] EMBL BI503558 [GAATACTTCATCGTTTTCTGAGTCCCATTTCCAACTTGTCCCACCATATTTTTCAGTCGGTTTATTCCACGNNCCGGTACGCTGCTCACAGTCACGCTTAGGGATGGGATTAAGCCCCTCGCGCGAAGTATCGATACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_513#0 ----------------TCGAAGATGCGAAATTATATATATTCACGGCATTCTCA---TGG 41
consensus_513#1 GAATACTTCATCGTTTTCTGAGTCCCATTTCCAACTTGTCCCACCATATTTTTCAGTCGG 60
** ** * * * *** *** * **
consensus_513#0 TCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAG----- 96
consensus_513#1 TTTATTCCACGNNCCG-GTACGCTGCTCACAGTCACGCTTAGGGATGGGATTAAGCCCCT 119
* **** ** ** * * * * * * ** * *** **
consensus_513#0 -----GTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGA 151
consensus_513#1 CGCGCGAAGTATCGATACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGA 179
* ** * *********************************************
consensus_513#0 GTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAG 211
consensus_513#1 GTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAG 239
************************************************************
consensus_513#0 GGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTA 271
consensus_513#1 GGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTA 299
************************************************************
consensus_513#0 TCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGT 331
consensus_513#1 TCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGT 359
************************************************************
consensus_513#0 TCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATA 391
consensus_513#1 TCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATA 419
************************************************************
consensus_513#0 TGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACT 451
consensus_513#1 TGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCAC- 478
***********************************************************
consensus_513#0 AATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCA 511
consensus_513#1 ------------------------------------------------------------
consensus_513#0 AGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGT 571
consensus_513#1 ------------------------------------------------------------
consensus_513#0 AGTTCTGGACCTTTGAAATAACGCGAGGCTACTCGTACATTATATTCTTGACCAGGGTGG 631
consensus_513#1 ------------------------------------------------------------
consensus_513#0 TAAAATTCTGCTAGACCCCAATCGATTAACCGTAACTTTCGATTTTCATGGTCTATCATA 691
consensus_513#1 ------------------------------------------------------------
consensus_513#0 ACGTTGTGCGGTTTAACGTCCCTATGCATTATTCCCATACTATGGCAATAATCTAATGCT 751
consensus_513#1 ------------------------------------------------------------
consensus_513#0 TTTAATAATTCGTAGAGGTAGTATCTTATGTCGTAGTCTGTTAGCGTCTGGTATAATTGC 811
consensus_513#1 ------------------------------------------------------------
consensus_513#0 TT 813
consensus_513#1 --
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |