cluster # 524

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Apis mellifera
cluster # 524 cluster # 524 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_524#0 length = 499 sequences # 1

consensus_524#1 length = 486 sequences # 2
consensus_524#2 length = 342 sequences # 1

consensusID : consensus_524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [TGTTATTAGAAAAATCGATCATTCCCAATCGATCCATTCACAACGAAATCGAACCAAAATGGAGAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAAAAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGANTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAGATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAGGAGCCCAAAAAATGCTTTGCCGTCGTNCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGA]

[+] EMBL BI506538             [TGTTATTAGAAAAATCGATCATTCCCAATCGATCCATTCACAACGAAATCGAACCAAAATGGAGAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAAAAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGANTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAGATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAGGAGCCCAAAAAATGCTTTGCCGTCGTNCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGA]




>consensus_524#0
TGTTATTAGAAAAATCGATCATTCCCAATCGATCCATTCACAACGAAATCGAACCAAAAT
GGAGAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAGAAAATAGATTGCCTTC
GACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAG
AGAAAAAGAAGATATGCTATGAGAGATAGACGAAAAAGAGATAGAGAAGGTATAAATATA
ACGAGAGAGGGGGGGANTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCT
CCCGAGTTAGATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTG
TTCCGTGCCCGGGGGGCGTAGGAGCCCAAAAAATGCTTTGCCGTCGTNCGCCTCTTTACT
TTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTT
ACAATAAGATATTATTAGA

consensusID : consensus_524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 486
fasta sequence

                              [GATAGCTCCGTGTGTGTGTTATTAGAAAAATCGATCATTCCTGTCACAACGAAATCGAACCAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTGAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAAATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAAAAGCCCAAAAAATGCTTTGCCGTCGTGCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGATG]

[+] EMBL BI514309             [GATAGCTCCGTGTGTGTGTTATTAGAAAAATCGATCATTCCTGTCACAACGAAATCGAACCAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTGAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAAATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAAAAGCCCAAAAAATGCTTTGCCGTCGTGCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGATG]
[+] EMBL BI505511             [                TGTTATTAGAAAAATCGATCATTCCTGTCACAACGAAATCGAACCAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTGAGAGATAGAGAAG                                                                                                                                                                                                                                                                              ]




>consensus_524#1
GATAGCTCCGTGTGTGTGTTATTAGAAAAATCGATCATTCCTGTCACAACGAAATCGAAC
CAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGC
CTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATC
TAAGAGAAAAAGAAGATATGCTGAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGG
GGTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAAATGCT
GGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGG
GCGTAAAAGCCCAAAAAATGCTTTGCCGTCGTGCGCCTCTTTACTTTAGGCTAATAATTT
AAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTAT
TAGATG

consensusID : consensus_524#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [AGACAAATCGTGATCAATCGTATTATTAATTCGAGCAATTTCTGCCGATGCTCTCAAGACGACGTATCGGTGCCAGGGCAAAAGGGAGAGAAAAAAAAAAATCAAACAATGGTTCCTCTTTACCTTATGATGGCTCCTCTCGAGAGCTCGGCTTCGTTCCGTGCCAGCGAAGCGTTGCAACGTTTCACAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAA]

[+] EMBL BI506367             [AGACAAATCGTGATCAATCGTATTATTAATTCGAGCAATTTCTGCCGATGCTCTCAAGACGACGTATCGGTGCCAGGGCAAAAGGGAGAGAAAAAAAAAAATCAAACAATGGTTCCTCTTTACCTTATGATGGCTCCTCTCGAGAGCTCGGCTTCGTTCCGTGCCAGCGAAGCGTTGCAACGTTTCACAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAA]




>consensus_524#2
AGACAAATCGTGATCAATCGTATTATTAATTCGAGCAATTTCTGCCGATGCTCTCAAGAC
GACGTATCGGTGCCAGGGCAAAAGGGAGAGAAAAAAAAAAATCAAACAATGGTTCCTCTT
TACCTTATGATGGCTCCTCTCGAGAGCTCGGCTTCGTTCCGTGCCAGCGAAGCGTTGCAA
CGTTTCACAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGAT
TGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATG
ATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_524#0      ------------------------------------------------------------
consensus_524#1      ------------------------------------------------------------
consensus_524#2      AGACAAATCGTGATCAATCGTATTATTAATTCGAGCAATTTCTGCCGATGCTCTCAAGAC 60
                                                                                 

consensus_524#0      ------------------------------------------------------------
consensus_524#1      ---------------------------------------------------------GAT 3
consensus_524#2      GACGTATCGGTGCCAGGGCAAAAGGGAGAGAAAAAAAAAAATCAAACAATGGTTCCTCTT 120
                                                                                 

consensus_524#0      -------------TGTTATTAGAAAAATCGA--TCATTCCCAATCGATCCATTCACAACG 45
consensus_524#1      AGCTCCGTGTGTGTGTTATTAGAAAAATCGA--TCATTCCTG----------TCACAACG 51
consensus_524#2      TACCTTATGATGGCTCCTCTCGAGAGCTCGGCTTCGTTCCGTGC--------CAGCGAAG 172
                                        * ** *  ***   ** ****               * * *

consensus_524#0      AAATCGAAC-CAAAATGGAGAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAG 104
consensus_524#1      AAATCGAAC-CAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAG--AAAAAAAAAAAAG 108
consensus_524#2      CGTTGCAACGTTTCACAAAAAAAAAAAAAAAAAGAAAAAAAAAAAG-AAAAAAAAAAAAG 231
                        *  ***     *   * ************************   *************

consensus_524#0      AAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAG 164
consensus_524#1      AAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAG 168
consensus_524#2      AAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAG 291
                     ************************************************************

consensus_524#0      AAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAAAAGAGATAG 224
consensus_524#1      AAAAATATGATCTAAGAGAAAAAGAAGATATGCTG-----------------AGAGATAG 211
consensus_524#2      AAAAATATGATCTAAGAGAAAAAGAAGATATGCTATG---------------AGAGATAG 336
                     **********************************                  ********

consensus_524#0      AGAAGGTATAAATATAACGAGAGAGGGGGGGANTGGGGATGATGCATTGGCCCATTTGTT 284
consensus_524#1      AGAAGGTATAAATATAACGAGAGAGGGGGG--GTGGGGATGATGCATTGGCCCATTTGTT 269
consensus_524#2      ACGAAA------------------------------------------------------ 342
                     *  *                                                        

consensus_524#0      TCTATAAAAAATCGCTCCCGAGTTAGATGCTGGATCGAACGATCGATCGATCGATCCGTG 344
consensus_524#1      TCTATAAAAAATCGCTCCCGAGTTAAATGCTGGATCGAACGATCGATCGATCGATCCGTG 329
consensus_524#2      ------------------------------------------------------------
                                                                                 

consensus_524#0      GTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAGGAGCCCAAAAAATGCTTTGCCGT 404
consensus_524#1      GTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAAAAGCCCAAAAAATGCTTTGCCGT 389
consensus_524#2      ------------------------------------------------------------
                                                                                 

consensus_524#0      CGTNCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTA 464
consensus_524#1      CGTGCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTA 449
consensus_524#2      ------------------------------------------------------------
                                                                                 

consensus_524#0      TAATATAATACATGTTACAATAAGATATTATTAGA-- 499
consensus_524#1      TAATATAATACATGTTACAATAAGATATTATTAGATG 486
consensus_524#2      -------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)