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Apis mellifera
cluster # 532 cluster # 532       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_532#0 length = 576 sequences # 1  
consensus_532#1 length = 573 sequences # 1  
consensus_532#2 length = 505 sequences # 1  
consensus_532#3 length = 274 sequences # 1  

consensusID : consensus_532#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence
                              [AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCCAGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGTTTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA]

[+] EMBL BI505554             [AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCCAGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGTTTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA]


>consensus_532#0 AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCT CAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCC AGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGT TTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGG AAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTC AGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCA ACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTC CTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTT TGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCG TAATTAAAATAATACGGCACTTCCGTTTAAGGAATA



consensusID : consensus_532#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence
                              [TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAATTCTACGTCGACGTAAAAATATCCAAATTCTTCAACAGAGGACAGATACTCCTGATAATGTGAACCAGTCTGATTATTTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACCCCATCCACACCTATTAAACAATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCTGAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCCACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAGGACACCAACACCGTTCAAAAATGCATTGGCAGAATTAGAACGGCGCAGCGGCGCGACTACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAAACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACAATTAGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCA]

[+] EMBL BI505630             [TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAATTCTACGTCGACGTAAAAATATCCAAATTCTTCAACAGAGGACAGATACTCCTGATAATGTGAACCAGTCTGATTATTTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACCCCATCCACACCTATTAAACAATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCTGAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCCACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAGGACACCAACACCGTTCAAAAATGCATTGGCAGAATTAGAACGGCGCAGCGGCGCGACTACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAAACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACAATTAGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCA]


>consensus_532#1 TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAATTCTACGTCGACGTAAAAATATCCA AATTCTTCAACAGAGGACAGATACTCCTGATAATGTGAACCAGTCTGATTATTTAATAAT AAATCAACAGGAACAACAGACTGGTGAGACCACCCCATCCACACCTATTAAACAATTGCC ATTCAGTCCGTCACAGTTTTTGAACAGTCTGAGTCCCGAGACATCTTCCTGGCCACGAGC AAGCACTCCTAAAGGCAGCAGCCCTGGTCCACTCACCACACCACAACCTACTGGTCTTCG ACGAAGTCAAAATGATGGCAATACGCCGAGGACACCAACACCGTTCAAAAATGCATTGGC AGAATTAGAACGGCGCAGCGGCGCGACTACTCAGTTACCTGCTACCCCCAGTCGTTTAGA TGCTCTAACCGAGATCATCAAACAGGAAACCGATCGTGAAAGTTTAGTAGGAACTAGTAC TATTCTTCAAGATTCTGGTTACAGTACAATTAGACGACGGGGTAAAGAGAATAGTGCTCC TGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCA



consensusID : consensus_532#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [GGACGAGCTCACAATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTTCTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCTCTTTATAACTCCTCTTTTTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTTTTTTTTTCTGGTAAAAAGAAAAAAGAAATAATTTTCAAATGAGCATTTTCTATATGCGTTCTTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTT]

[+] EMBL BI507400             [GGACGAGCTCACAATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTTCTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCTCTTTATAACTCCTCTTTTTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTTTTTTTTTCTGGTAAAAAGAAAAAAGAAATAATTTTCAAATGAGCATTTTCTATATGCGTTCTTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTT]


>consensus_532#2 GGACGAGCTCACAATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCAT AACCTCTCTATTTCTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCTCTTTATAA CTCCTCTTTTTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTAT CATATGTTTTTTTTTTCTGGTAAAAAGAAAAAAGAAATAATTTTCAAATGAGCATTTTCT ATATGCGTTCTTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCA CGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATT CGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGT ACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAAT GACGCGAGCTGCTCGACGATTCCTT



consensusID : consensus_532#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence
                              [CTTTTTTTTTTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCAAATTTATCACACGANNNAAAAAAAAAAAA]

[+] EMBL BI508703             [CTTTTTTTTTTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCAAATTTATCACACGANNNAAAAAAAAAAAA]


>consensus_532#3 CTTTTTTTTTTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGC TGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTT TTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGAC ATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTC TATCAAATTTATCACACGANNNAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_532#0      AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCT 60
consensus_532#3      ------------------------------------------------------------
consensus_532#2      ------------------------------------------------------------
consensus_532#1      ------------------------TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAAT 36
                                                                                 

consensus_532#0      CAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCC 120
consensus_532#3      ------------------------------------------------------------
consensus_532#2      ------------------------------------------------------------
consensus_532#1      TCTACGTCGACGTAAAAATATCCAAATT-CTTCAACAGAGGACAGATACTCCTGATAATG 95
                                                                                 

consensus_532#0      AGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGT 180
consensus_532#3      ------------------------------------------------------------
consensus_532#2      -----------------------------------------------GGACGAGCTCACA 13
consensus_532#1      TGAACCAGTCTGATTAT-TTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACC 154
                                                                                 

consensus_532#0      TTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGG 240
consensus_532#3      ------------------------------------------------------------
consensus_532#2      ATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTT 73
consensus_532#1      CCATCCACACCT---ATTAAAC-AATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCT 210
                                                                                 

consensus_532#0      AAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTC----GACAGTCCCTGTTGTAT 296
consensus_532#3      ------------------------------------------------------------
consensus_532#2      CTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCT----CTTTATAACTCCTCTTT 129
consensus_532#1      GAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCC 270
                                                                                 

consensus_532#0      CCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATG 356
consensus_532#3      ---------------------------------------------------CTTTTTTTT 9
consensus_532#2      TTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTT 189
consensus_532#1      ACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAG 330
                                                                                 

consensus_532#0      GGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACG 416
consensus_532#3      TTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACG 69
consensus_532#2      TTTTTTTCTGGTAAAAAGA--AAAAAGAAATAATTTTCAAATGA-GC-ATTTTCTATATG 245
consensus_532#1      GACACCAACACCGTTCAAAAATGCAT-TGGCAGAATTAGAACGGCGC-AGCGGCGCGACT 388
                                       *     *          *   ** *  ** *    *   *  

consensus_532#0      ATTCC-TTAGCAGTCATGGATACTTGCCATTACGTCC-TCGTTCTTTGAATTTTTGAGAG 474
consensus_532#3      ATTCC-TTAGCAGTCATGGATACTTGCCATTACGTCC-TCGTTCTTTGAATTTTTGAGAG 127
consensus_532#2      CGTTC-TTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGAC 304
consensus_532#1      ACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAA 448
                       *   **               * *       *              *        ** 

consensus_532#0      TCCTTTTGTAAACATG-GGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTA-A 532
consensus_532#3      TCCTTTTGTAAACATG-GGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTA-A 185
consensus_532#2      TTTGTGTCCGTACAAC-GGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTC-G 362
consensus_532#1      ACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACA 508
                                *      * *       *           *  *     *   ** *   

consensus_532#0      ACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA---------------- 576
consensus_532#3      ACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCA 245
consensus_532#2      AC-AGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTA 421
consensus_532#1      ATTAGACG--ACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTC 566
                     *  ** *              *      * *   *   *  *                  

consensus_532#0      ------------------------------------------------------------
consensus_532#3      AATTTATCA-CACGANNNAAAAAAAAAAAA------------------------------ 274
consensus_532#2      CATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATG 481
consensus_532#1      TCTCTCA----------------------------------------------------- 573
                                                                                 

consensus_532#0      ------------------------
consensus_532#3      ------------------------
consensus_532#2      ACGCGAGCTGCTCGACGATTCCTT 505
consensus_532#1      ------------------------
                                             




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)