These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCCAGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGTTTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA] [+] EMBL BI505554 [AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCCAGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGTTTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA] consensusID : consensus_532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAATTCTACGTCGACGTAAAAATATCCAAATTCTTCAACAGAGGACAGATACTCCTGATAATGTGAACCAGTCTGATTATTTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACCCCATCCACACCTATTAAACAATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCTGAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCCACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAGGACACCAACACCGTTCAAAAATGCATTGGCAGAATTAGAACGGCGCAGCGGCGCGACTACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAAACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACAATTAGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCA] [+] EMBL BI505630 [TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAATTCTACGTCGACGTAAAAATATCCAAATTCTTCAACAGAGGACAGATACTCCTGATAATGTGAACCAGTCTGATTATTTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACCCCATCCACACCTATTAAACAATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCTGAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCCACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAGGACACCAACACCGTTCAAAAATGCATTGGCAGAATTAGAACGGCGCAGCGGCGCGACTACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAAACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACAATTAGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCA] consensusID : consensus_532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [GGACGAGCTCACAATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTTCTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCTCTTTATAACTCCTCTTTTTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTTTTTTTTTCTGGTAAAAAGAAAAAAGAAATAATTTTCAAATGAGCATTTTCTATATGCGTTCTTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTT] [+] EMBL BI507400 [GGACGAGCTCACAATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTTCTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCTCTTTATAACTCCTCTTTTTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTTTTTTTTTCTGGTAAAAAGAAAAAAGAAATAATTTTCAAATGAGCATTTTCTATATGCGTTCTTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTT] consensusID : consensus_532#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [CTTTTTTTTTTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCAAATTTATCACACGANNNAAAAAAAAAAAA] [+] EMBL BI508703 [CTTTTTTTTTTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCAAATTTATCACACGANNNAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_532#0 AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCT 60 consensus_532#3 ------------------------------------------------------------ consensus_532#2 ------------------------------------------------------------ consensus_532#1 ------------------------TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAAT 36 consensus_532#0 CAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCC 120 consensus_532#3 ------------------------------------------------------------ consensus_532#2 ------------------------------------------------------------ consensus_532#1 TCTACGTCGACGTAAAAATATCCAAATT-CTTCAACAGAGGACAGATACTCCTGATAATG 95 consensus_532#0 AGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGT 180 consensus_532#3 ------------------------------------------------------------ consensus_532#2 -----------------------------------------------GGACGAGCTCACA 13 consensus_532#1 TGAACCAGTCTGATTAT-TTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACC 154 consensus_532#0 TTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGG 240 consensus_532#3 ------------------------------------------------------------ consensus_532#2 ATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTT 73 consensus_532#1 CCATCCACACCT---ATTAAAC-AATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCT 210 consensus_532#0 AAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTC----GACAGTCCCTGTTGTAT 296 consensus_532#3 ------------------------------------------------------------ consensus_532#2 CTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCT----CTTTATAACTCCTCTTT 129 consensus_532#1 GAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCC 270 consensus_532#0 CCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATG 356 consensus_532#3 ---------------------------------------------------CTTTTTTTT 9 consensus_532#2 TTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTT 189 consensus_532#1 ACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAG 330 consensus_532#0 GGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACG 416 consensus_532#3 TTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACG 69 consensus_532#2 TTTTTTTCTGGTAAAAAGA--AAAAAGAAATAATTTTCAAATGA-GC-ATTTTCTATATG 245 consensus_532#1 GACACCAACACCGTTCAAAAATGCAT-TGGCAGAATTAGAACGGCGC-AGCGGCGCGACT 388 * * * ** * ** * * * consensus_532#0 ATTCC-TTAGCAGTCATGGATACTTGCCATTACGTCC-TCGTTCTTTGAATTTTTGAGAG 474 consensus_532#3 ATTCC-TTAGCAGTCATGGATACTTGCCATTACGTCC-TCGTTCTTTGAATTTTTGAGAG 127 consensus_532#2 CGTTC-TTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGAC 304 consensus_532#1 ACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAA 448 * ** * * * * ** consensus_532#0 TCCTTTTGTAAACATG-GGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTA-A 532 consensus_532#3 TCCTTTTGTAAACATG-GGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTA-A 185 consensus_532#2 TTTGTGTCCGTACAAC-GGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTC-G 362 consensus_532#1 ACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACA 508 * * * * * * * ** * consensus_532#0 ACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA---------------- 576 consensus_532#3 ACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCA 245 consensus_532#2 AC-AGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTA 421 consensus_532#1 ATTAGACG--ACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTC 566 * ** * * * * * * * consensus_532#0 ------------------------------------------------------------ consensus_532#3 AATTTATCA-CACGANNNAAAAAAAAAAAA------------------------------ 274 consensus_532#2 CATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATG 481 consensus_532#1 TCTCTCA----------------------------------------------------- 573 consensus_532#0 ------------------------ consensus_532#3 ------------------------ consensus_532#2 ACGCGAGCTGCTCGACGATTCCTT 505 consensus_532#1 ------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |