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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 621 fasta sequence
[GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGTTTATTGGCGTTGTTATTTCAATGCTGTGACGTGTTTCAAGAGAAAGTGATAATAAGCCAACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTACTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTA]
[+] EMBL BI503345 [GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGTTTATTGGCGTTGTTATTTCAATGCTGTGACGTGTTTCAAGAGAAAGTGATAATAAGCCAACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAAACCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCAaaaaaaaa ]
[+] EMBL BI508754 [ CGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGGTGCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGGTTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTACTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTA]
[+] EMBL BI516034 [ AATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAAT ]
consensusID : consensus_533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGTACTTCGATTTTATATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGATTATTTAGAAATACTGTATGGAAAGCATATTTATCAGATTGAATTTAATCCTCCACCTCCAAAAATTTCTTTGATAGAGAAAAGAATCAGAGATTCAGAGACATATGATGAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGTATTGGAACATGCGAAGAAATTTATGAGGAAAAAGAAGCAAAAAGAAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAAATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA]
[+] EMBL BI506557 [TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGTACTTCGATTTTATATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGATTATTTAGAAATACTGTATGGAAAGCATATTTATCAGATTGAATTTAATCCTCCACCTCCAAAAATTTCTTTGATAGAGAAAAGAATCAGAGATTCAGAGACATATGATGAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGTATTGGAACATGCGAAGAAATTTATGAGGAAAAAGAAGCAAAAAGAAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAAATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_533#0 GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGT 60
consensus_533#1 -----------------TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGT 43
* ** ** * * * * *****
consensus_533#0 TTATTGGCGTTGTTATTTCAATGCTGTGACGT--GTTTCAAGAGAAAGTGATAATAAGCC 118
consensus_533#1 ACTTCGATTTTAT-ATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTA-CAAGTA 101
* * ** * **** ** ** * * * * * * * ** ***
consensus_533#0 AACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACA 178
consensus_533#1 TGTGCAG---ATTATCAAAAGTACAATGTTTATA---TTCAACAAAATGGAAAAAGATCT 155
* * ** *** * * ** * ** * ** ** * * *
consensus_533#0 AATAAATCAGAAA--TTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATT 236
consensus_533#1 TCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGAT 215
* * * ** * ** *** * **** * * ** * * *
consensus_533#0 TATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGA 296
consensus_533#1 TATTTAGAAATA--CTGTATGGAAAGCATATTTATCAGATTGAATTTAA-TCCTCCACCT 272
***** *** * * * ** * **** * ** ** * ** *
consensus_533#0 CTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTT 356
consensus_533#1 CCAAA-AATTTCTT--------TGATAGAGAAAAGAATCAGAGATTCAGAGACATATGAT 323
* * ** ***** * ** **** * * * * ** *
consensus_533#0 AACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGA 416
consensus_533#1 GAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGT--- 380
* ***** * ** * ** ** ** * * *** *** * **
consensus_533#0 ATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTAT 476
consensus_533#1 ATTGGAACATGCGAA--GAAATTTATGAGGAAAAAGAAGCAAA---AAG----------- 424
** * * * **** * ** *** ** *** *** **
consensus_533#0 TCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTA 536
consensus_533#1 --AAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAA 482
** * * ** ** * ** * * ** ***** *** ** *
consensus_533#0 CTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAA 596
consensus_533#1 ATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA------------- 529
* * * **** * * * ***** ** ** *** **
consensus_533#0 AATGGAAAAAGATCTTCTGGCTTTA 621
consensus_533#1 -------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |