|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1128 fasta sequence
[TATTTTTTATTTTTTTATAATAATCTTATAATATATCTAATTTATTTTTTAAATTCTTATATAAGAATTTGACATAAAATATATAAAAACATTTGTATAAAACTTATAAAAGTAAAATATTTCTATTTATTTTATTCTCTTTGATTTTATTGCTTCTTCTTATTTTTTTAATCGGGATTAGATTAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGGGGTCATAGATTGCGGAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAATCCTTTAGAATTATACGTTTTGTAGAAGTAGCCCCATTATATAATACAACAACCGTTTCTCCCGACGGGGTAAGAAAAGGCTGGAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAACGAATCTGCTAACGGGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTCTGGATTTACGATAATAGGAGCGTCGAGATTGTTATTAACAACGGTTGGTCCACCAGTTTTATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTATGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGTTCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCTCGTGTATACGATCTATGATAGTTGCAGGATAAGTAGAATCTTTATACCAATGGATACCTACTCCAGCAATATATTTTCCTCCAATCTCGATCGCTGCTTTGACATATTCGATTGCTTTGATTCTATTATCGTCATAAGTTAAAAGTAACGTTTTATTAAATGGTGATGAGCCAAAATCGGGCCGAAATAATTAGCAATCCAATTAGCTTGTGGTTTGGGTATCCATGTCATAGAAATATTTGGATTATCGATCATAAAACCGAGCAACGGTTCATTGCTAGGTGTAATTCCCCATATATTAACACCGTTTCTTTCATATTTATCCAAAAATTTAATCAAATAATTAACGTAGGTTTCATAGTGGTCTTCTTTCAAATAAGTGATATTGTTGTCGAATTGTTTCATCCACAATG]
[+] EMBL BQ103827 [TATTTTTTATTTTTTTATAATAATCTTATAATATATCTAATTTATTTTTTAAATTCTTATATAAGAATTTGACATAAAATATATAAAAACATTTGTATAAAACTTATAAAAGTAAAATATTTCTATTTATTTTATTCTCTTTGATTTTATTGCTTCTTCTTATTTTTTTAATCGGGATTAGATTAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGGGGTCATAGATTGCGGAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAATCCTTTAGAATTATACGTTTTGTAGAAGTAGCCCCATTATATAATACAACAACCGTTTCTCCCGACGGGGTAAGAAAAGGCTGGAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAACGAATCTGCTAACGGGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTCTGGATTTACGATAATAGGAGCATCGAGATTGTTATTAACAACGGTTGGTCCACCAGTTTTATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTATGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGTTCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCTCGTGTATACGATCTATGATAGTTGCAGGAT AGTAGAATCTTTAT CCAATGGATACCTACTCCAGCAATATA TTTCCTCC ATCTCGATCGCTGC TTGACA ]
[+] EMBL BQ103785 [ TAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGTGTTCATAGATTGCGGAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAATCCTTTAGAATTATATGTTTTGTAGAAGTAGCCCCATTATATAATACAACAACCGTTTCTCCCGACGGTGTAAG AAAGGCTGTAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAACGAATCTGCTAACGTGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTCTGGATTTACGATAATAGGAGCGTCGAGATTGTTATTAACAACGGTTGGTCCACCAGTTTTATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTATGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGTTCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCTCGTGTATACGATCTATGATAGTTGCAGGATAAGTAGAATCTTTATACCAATGTATACCTATTCCAGCAATATATTTTCCTCCAATCTCGATCGCTGCTTTGACATATTCGATTGCTTTGATTCTATTATCGTCATAAGTTAAAAGTAACGTTTTATTAAATGGTGATGAGCCAAAATCGGGCCGAAATAATTAGCAATCCAATTAGCTTGTGGTTTGGGTATCCATGTCATAGAAATATTTGGATTATCGATCATAAAACCGAGCAACGGTTCATTGCTAGGTGTAATTCCCCATATATTAACACCGTTTCTTTCATATTTATCCAAAAATTTAATCAAATAATTAACGTAGGTTTCATAGTGGTCTTCTTTCAAATAAGTGATATTGTTGTCGAATTGTTTCATCCACAATG]
consensusID : consensus_534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence
[CCGTGTAGATAATGAAATAATCGCGTGTGTCTGCAATGCGACATATTGCGACGGTATACCGGATAATATTCCGGAAGTACCTACGGAAGGTAATTCCTATTGGTACGTGTCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGGTGTGAGAACTTTGTCGCGGATACAACAATCACCGTAGACAGTAAGAAAAAATATCAAAAAATAATTGGGTTTGGAGGCGCGTTTACCGATGCCACTGGTATAAACATAGCGAAACTCAGTCGAGCTACTCAGGAACAACTGATTCGTGCGTATTACGATCCGAAAAAAGGAAGCAGATACACATTGGGCCGTATACCTATTGGTTCCACCGATTTTTCTACGAGAATTTACACGTACGACGATGCTCCCGGTGATAAATTGTTAAAAAACTTTTCCCTTGCACCGGAAGATTACAATTACAAGATACCATATGTAAAATTAGCTGTTGAATTAAATCCTGAAGTACTATTGTTCGCAGCAGCATGGACTGCCCCATTGTGGATGAAACAATTCGACAACAATATCACTTATTTGAAAGAAGAACACTATGAAACCTACGTTAATTATTTGATTAAATTT]
[+] EMBL BI503319 [CCGTGTAGATAATGAAATAATCGCGTGTGTCTGCAATGCGACATATTGCGACGGTATACCGGATAATATTCCGGAAGTACCTATGGAAGGTAATTCCTATTGGTACGTGTCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGGTGTGAGAACTTTGTCGCGGATACAACAATCACCGTAGACAGTAAGAAAAAATATCAAAAAATAATTGGGTTTGGAGGCGCGTTTACCGATGCCACTGGTATAAACATAGCGAAACTCAGTCGAGCTACTCAGGAACAACTGATTCGTGCGTATTACGATCCGAAAAAAGGAAGCAGATATACATTGGGCCGTATACCTATTGGTTCCACCGATTTTTCTACGAGAATTTACACGTACGACGATGCTCCCGGTGATAAATTGTTAAAAAACTTTTCCCTTGCACCGGAAGATTACAATTACAAGATACCATATGTAAAATTAGCTGTTGAATTAAATCCTGAAGTACTATTGTTCGCAGCAGCATGGACTGCCCCATTGTGGATGAAACAATTCGACAACAATATCACTTATTTGAAAGAAGAACACTATGAAACCTACGTTAATTATTTGATTAAATTT]
[+] EMBL BI513071 [ TTGCGACGGTATACCGGATAATATTCCGGAAGTACCTACAGAAGGTAATTCCTATTGGTACGTGTCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGGTGTGAGAACTTTGTCGCGGATACAACAATCACCGTAGACAGTAAGAAAAAATATCAAAAAATAATTGGGTTTGGAGGCGCGTTTACCGATGCCACTGGTATAAACATAGCGAAACTCAGTCGAGCTACTCAGGAACAACTGATTCGTGCGTATTACGATCCGAAAAAAGGAAGCAGATACACATTGGGCCGTATACCTATTGGTTCCACCGATTTTTCTACGAGAATTTACACGTACGACGATGCTCCCGGTGATAAATTGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_534#0 TATTTTTTATTTTTTTATAATAATCTTATAATATATCTAATTTATTTTTTAAATTCTTAT 60
consensus_534#1 ------------------------------------------------------------
consensus_534#0 ATAAGAATTTGACATAAAATATATAAAAACATTTGTATAAAACTTATAAAAGTAAAATAT 120
consensus_534#1 ------------------------------------------------------------
consensus_534#0 TTCTATTTATTTTATTCTCTTTGATTTTATTGCTTCTTCTTATTTTTTTAATCGGGATTA 180
consensus_534#1 ------------------------------------------------------------
consensus_534#0 GATTAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGGGGTCATAGATTGCG 240
consensus_534#1 --------CCGTGTAGATAATGAAATAATCGCGTGTGTCTGCAATGCGACAT--ATTGCG 50
* * * ** * ** * * * * ** * * *** ******
consensus_534#0 GAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAA---TCCTTTAGAATTATACGTT 297
consensus_534#1 ACGGTA-TACCGGATAATATTCCGGAAGTACCTACGGAAGGTAATTCCTATTGGTACGTG 109
* ** * ** ** ** * * * * * * ** * * *****
consensus_534#0 TTGTAGAAGTAGCCCCATTATAT-AATACAACAACCGTTTCTCCCGACGGGGTAAGAAAA 356
consensus_534#1 TCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGG-TGTGAGAA 168
* * *** * * ** ** ** ** *** ** * ** **
consensus_534#0 GGCTGGAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAAC 416
consensus_534#1 CTTTGTCGCG--GATACAACAATCACC----GTAGACAGTAAGAAAAAAT----ATCAAA 218
** * *** ** ** * * **** * * **** *** *****
consensus_534#0 GAATCTGCTAACGGGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTC 476
consensus_534#1 AAATA----ATTGGGTTTGGAGGCGC------------GTTTACCGATGCCACTGGTATA 262
*** * ******* ** ***** * ** *** *
consensus_534#0 TGGATTTACGATAATAGGAGCGTCGAGATTGTTATTAACAAC-GGTTGGTCCACCAGTTT 535
consensus_534#1 AACATA-GCGAAACTCAG----TCGAGCTACTCAGGAACAACTGATTCGTGCGT-ATTAC 316
** *** * * * ***** * * * ****** * ** ** * * *
consensus_534#0 TATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTA 595
consensus_534#1 GATCCGAAAAAAGGAAGCAGA-TACACATTGGGCCGTATACCTATTGGTTCCACCGATTT 375
**** ** * ** *** *** * * * *** * * * ***
consensus_534#0 TGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGT 655
consensus_534#1 TTCTACGAGAAT---TTACACGTACG-ACGATGCTCCCGGTGATAAATTGTTAAAAAACT 431
* ** * ** ** * * * * ***** * * * * ** * * * *
consensus_534#0 TCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCT 715
consensus_534#1 TTTCCCTTGCACCGGA-----AGATTACAATTACAAGATACCATATGTAAAATTAGCTGT 486
* *** * * * * ** * * **** ** *** * ** * *
consensus_534#0 CGTGTATA----CGATCTATGATAGTT-GCAGGA-TAAGTAGAATCTTTATACCAATGGA 769
consensus_534#1 TGAATTAAATCCTGAAGTACTATTGTTCGCAGCAGCATGGACTGCCCCATTGTGGATGAA 546
* * * ** ** ** *** **** * * * * * * *** *
consensus_534#0 TACCTACTCCAGCAATATATTTTCCTCCAATCTCGATCGCTGCTTTGACATATTCGATTG 829
consensus_534#1 ACAATTCGACAACAATATCACTTATTTGAAAGAAGAACACTA-TGAAACCTACGTTAATT 605
* * ** ****** ** * ** ** * ** * ** ** * *
consensus_534#0 CTTTGATTCTATTATCGTCATAAGTTAAAAGTAACGTTTTATTAAATGGTGATGAGCCAA 889
consensus_534#1 ATTTGATTAAATTT---------------------------------------------- 619
******* ***
consensus_534#0 AATCGGGCCGAAATAATTAGCAATCCAATTAGCTTGTGGTTTGGGTATCCATGTCATAGA 949
consensus_534#1 ------------------------------------------------------------
consensus_534#0 AATATTTGGATTATCGATCATAAAACCGAGCAACGGTTCATTGCTAGGTGTAATTCCCCA 1009
consensus_534#1 ------------------------------------------------------------
consensus_534#0 TATATTAACACCGTTTCTTTCATATTTATCCAAAAATTTAATCAAATAATTAACGTAGGT 1069
consensus_534#1 ------------------------------------------------------------
consensus_534#0 TTCATAGTGGTCTTCTTTCAAATAAGTGATATTGTTGTCGAATTGTTTCATCCACAATG 1128
consensus_534#1 -----------------------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |