These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1128 fasta sequence [TATTTTTTATTTTTTTATAATAATCTTATAATATATCTAATTTATTTTTTAAATTCTTATATAAGAATTTGACATAAAATATATAAAAACATTTGTATAAAACTTATAAAAGTAAAATATTTCTATTTATTTTATTCTCTTTGATTTTATTGCTTCTTCTTATTTTTTTAATCGGGATTAGATTAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGGGGTCATAGATTGCGGAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAATCCTTTAGAATTATACGTTTTGTAGAAGTAGCCCCATTATATAATACAACAACCGTTTCTCCCGACGGGGTAAGAAAAGGCTGGAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAACGAATCTGCTAACGGGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTCTGGATTTACGATAATAGGAGCGTCGAGATTGTTATTAACAACGGTTGGTCCACCAGTTTTATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTATGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGTTCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCTCGTGTATACGATCTATGATAGTTGCAGGATAAGTAGAATCTTTATACCAATGGATACCTACTCCAGCAATATATTTTCCTCCAATCTCGATCGCTGCTTTGACATATTCGATTGCTTTGATTCTATTATCGTCATAAGTTAAAAGTAACGTTTTATTAAATGGTGATGAGCCAAAATCGGGCCGAAATAATTAGCAATCCAATTAGCTTGTGGTTTGGGTATCCATGTCATAGAAATATTTGGATTATCGATCATAAAACCGAGCAACGGTTCATTGCTAGGTGTAATTCCCCATATATTAACACCGTTTCTTTCATATTTATCCAAAAATTTAATCAAATAATTAACGTAGGTTTCATAGTGGTCTTCTTTCAAATAAGTGATATTGTTGTCGAATTGTTTCATCCACAATG] [+] EMBL BQ103827 [TATTTTTTATTTTTTTATAATAATCTTATAATATATCTAATTTATTTTTTAAATTCTTATATAAGAATTTGACATAAAATATATAAAAACATTTGTATAAAACTTATAAAAGTAAAATATTTCTATTTATTTTATTCTCTTTGATTTTATTGCTTCTTCTTATTTTTTTAATCGGGATTAGATTAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGGGGTCATAGATTGCGGAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAATCCTTTAGAATTATACGTTTTGTAGAAGTAGCCCCATTATATAATACAACAACCGTTTCTCCCGACGGGGTAAGAAAAGGCTGGAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAACGAATCTGCTAACGGGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTCTGGATTTACGATAATAGGAGCATCGAGATTGTTATTAACAACGGTTGGTCCACCAGTTTTATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTATGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGTTCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCTCGTGTATACGATCTATGATAGTTGCAGGAT AGTAGAATCTTTAT CCAATGGATACCTACTCCAGCAATATA TTTCCTCC ATCTCGATCGCTGC TTGACA ] [+] EMBL BQ103785 [ TAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGTGTTCATAGATTGCGGAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAATCCTTTAGAATTATATGTTTTGTAGAAGTAGCCCCATTATATAATACAACAACCGTTTCTCCCGACGGTGTAAG AAAGGCTGTAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAACGAATCTGCTAACGTGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTCTGGATTTACGATAATAGGAGCGTCGAGATTGTTATTAACAACGGTTGGTCCACCAGTTTTATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTATGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGTTCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCTCGTGTATACGATCTATGATAGTTGCAGGATAAGTAGAATCTTTATACCAATGTATACCTATTCCAGCAATATATTTTCCTCCAATCTCGATCGCTGCTTTGACATATTCGATTGCTTTGATTCTATTATCGTCATAAGTTAAAAGTAACGTTTTATTAAATGGTGATGAGCCAAAATCGGGCCGAAATAATTAGCAATCCAATTAGCTTGTGGTTTGGGTATCCATGTCATAGAAATATTTGGATTATCGATCATAAAACCGAGCAACGGTTCATTGCTAGGTGTAATTCCCCATATATTAACACCGTTTCTTTCATATTTATCCAAAAATTTAATCAAATAATTAACGTAGGTTTCATAGTGGTCTTCTTTCAAATAAGTGATATTGTTGTCGAATTGTTTCATCCACAATG] consensusID : consensus_534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [CCGTGTAGATAATGAAATAATCGCGTGTGTCTGCAATGCGACATATTGCGACGGTATACCGGATAATATTCCGGAAGTACCTACGGAAGGTAATTCCTATTGGTACGTGTCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGGTGTGAGAACTTTGTCGCGGATACAACAATCACCGTAGACAGTAAGAAAAAATATCAAAAAATAATTGGGTTTGGAGGCGCGTTTACCGATGCCACTGGTATAAACATAGCGAAACTCAGTCGAGCTACTCAGGAACAACTGATTCGTGCGTATTACGATCCGAAAAAAGGAAGCAGATACACATTGGGCCGTATACCTATTGGTTCCACCGATTTTTCTACGAGAATTTACACGTACGACGATGCTCCCGGTGATAAATTGTTAAAAAACTTTTCCCTTGCACCGGAAGATTACAATTACAAGATACCATATGTAAAATTAGCTGTTGAATTAAATCCTGAAGTACTATTGTTCGCAGCAGCATGGACTGCCCCATTGTGGATGAAACAATTCGACAACAATATCACTTATTTGAAAGAAGAACACTATGAAACCTACGTTAATTATTTGATTAAATTT] [+] EMBL BI503319 [CCGTGTAGATAATGAAATAATCGCGTGTGTCTGCAATGCGACATATTGCGACGGTATACCGGATAATATTCCGGAAGTACCTATGGAAGGTAATTCCTATTGGTACGTGTCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGGTGTGAGAACTTTGTCGCGGATACAACAATCACCGTAGACAGTAAGAAAAAATATCAAAAAATAATTGGGTTTGGAGGCGCGTTTACCGATGCCACTGGTATAAACATAGCGAAACTCAGTCGAGCTACTCAGGAACAACTGATTCGTGCGTATTACGATCCGAAAAAAGGAAGCAGATATACATTGGGCCGTATACCTATTGGTTCCACCGATTTTTCTACGAGAATTTACACGTACGACGATGCTCCCGGTGATAAATTGTTAAAAAACTTTTCCCTTGCACCGGAAGATTACAATTACAAGATACCATATGTAAAATTAGCTGTTGAATTAAATCCTGAAGTACTATTGTTCGCAGCAGCATGGACTGCCCCATTGTGGATGAAACAATTCGACAACAATATCACTTATTTGAAAGAAGAACACTATGAAACCTACGTTAATTATTTGATTAAATTT] [+] EMBL BI513071 [ TTGCGACGGTATACCGGATAATATTCCGGAAGTACCTACAGAAGGTAATTCCTATTGGTACGTGTCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGGTGTGAGAACTTTGTCGCGGATACAACAATCACCGTAGACAGTAAGAAAAAATATCAAAAAATAATTGGGTTTGGAGGCGCGTTTACCGATGCCACTGGTATAAACATAGCGAAACTCAGTCGAGCTACTCAGGAACAACTGATTCGTGCGTATTACGATCCGAAAAAAGGAAGCAGATACACATTGGGCCGTATACCTATTGGTTCCACCGATTTTTCTACGAGAATTTACACGTACGACGATGCTCCCGGTGATAAATTGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_534#0 TATTTTTTATTTTTTTATAATAATCTTATAATATATCTAATTTATTTTTTAAATTCTTAT 60 consensus_534#1 ------------------------------------------------------------ consensus_534#0 ATAAGAATTTGACATAAAATATATAAAAACATTTGTATAAAACTTATAAAAGTAAAATAT 120 consensus_534#1 ------------------------------------------------------------ consensus_534#0 TTCTATTTATTTTATTCTCTTTGATTTTATTGCTTCTTCTTATTTTTTTAATCGGGATTA 180 consensus_534#1 ------------------------------------------------------------ consensus_534#0 GATTAAAGTAATATTCAAAAAATTTTTATTATTTATATTTTAAAGGGGTCATAGATTGCG 240 consensus_534#1 --------CCGTGTAGATAATGAAATAATCGCGTGTGTCTGCAATGCGACAT--ATTGCG 50 * * * ** * ** * * * * ** * * *** ****** consensus_534#0 GAGATAATTCCAAGCAAAGTTTACTATCTTTTTGCAAA---TCCTTTAGAATTATACGTT 297 consensus_534#1 ACGGTA-TACCGGATAATATTCCGGAAGTACCTACGGAAGGTAATTCCTATTGGTACGTG 109 * ** * ** ** ** * * * * * * ** * * ***** consensus_534#0 TTGTAGAAGTAGCCCCATTATAT-AATACAACAACCGTTTCTCCCGACGGGGTAAGAAAA 356 consensus_534#1 TCAAATAAGCAAGGGCTGCGAATGAACGTGTCAGAAGTAAAGTTTGACAGG-TGTGAGAA 168 * * *** * * ** ** ** ** *** ** * ** ** consensus_534#0 GGCTGGAGAATTGATCGAATTATTATCAATAATAGAAATTCGGAAAGAATCTCTATCAAC 416 consensus_534#1 CTTTGTCGCG--GATACAACAATCACC----GTAGACAGTAAGAAAAAAT----ATCAAA 218 ** * *** ** ** * * **** * * **** *** ***** consensus_534#0 GAATCTGCTAACGGGTTTGATAGCATAATACAAAGGTTGTTTATAAAATTCATCGGTTTC 476 consensus_534#1 AAATA----ATTGGGTTTGGAGGCGC------------GTTTACCGATGCCACTGGTATA 262 *** * ******* ** ***** * ** *** * consensus_534#0 TGGATTTACGATAATAGGAGCGTCGAGATTGTTATTAACAAC-GGTTGGTCCACCAGTTT 535 consensus_534#1 AACATA-GCGAAACTCAG----TCGAGCTACTCAGGAACAACTGATTCGTGCGT-ATTAC 316 ** *** * * * ***** * * * ****** * ** ** * * * consensus_534#0 TATCCAGAACCATATTCCAATCTACCCATCCAACTGACCAATGATTCATATAATCTATTA 595 consensus_534#1 GATCCGAAAAAAGGAAGCAGA-TACACATTGGGCCGTATACCTATTGGTTCCACCGATTT 375 **** ** * ** *** *** * * * *** * * * *** consensus_534#0 TGCTTAAAATATATTTTTCGCCTCTTTGCCATGCTTCTGATTTAAGTTTACTGCTACAGT 655 consensus_534#1 TTCTACGAGAAT---TTACACGTACG-ACGATGCTCCCGGTGATAAATTGTTAAAAAACT 431 * ** * ** ** * * * * ***** * * * * ** * * * * consensus_534#0 TCCATATTGGATTAAATATGGATGCTTCAGTCATAAGAATAAATTTGTCAGGATATTTCT 715 consensus_534#1 TTTCCCTTGCACCGGA-----AGATTACAATTACAAGATACCATATGTAAAATTAGCTGT 486 * *** * * * * ** * * **** ** *** * ** * * consensus_534#0 CGTGTATA----CGATCTATGATAGTT-GCAGGA-TAAGTAGAATCTTTATACCAATGGA 769 consensus_534#1 TGAATTAAATCCTGAAGTACTATTGTTCGCAGCAGCATGGACTGCCCCATTGTGGATGAA 546 * * * ** ** ** *** **** * * * * * * *** * consensus_534#0 TACCTACTCCAGCAATATATTTTCCTCCAATCTCGATCGCTGCTTTGACATATTCGATTG 829 consensus_534#1 ACAATTCGACAACAATATCACTTATTTGAAAGAAGAACACTA-TGAAACCTACGTTAATT 605 * * ** ****** ** * ** ** * ** * ** ** * * consensus_534#0 CTTTGATTCTATTATCGTCATAAGTTAAAAGTAACGTTTTATTAAATGGTGATGAGCCAA 889 consensus_534#1 ATTTGATTAAATTT---------------------------------------------- 619 ******* *** consensus_534#0 AATCGGGCCGAAATAATTAGCAATCCAATTAGCTTGTGGTTTGGGTATCCATGTCATAGA 949 consensus_534#1 ------------------------------------------------------------ consensus_534#0 AATATTTGGATTATCGATCATAAAACCGAGCAACGGTTCATTGCTAGGTGTAATTCCCCA 1009 consensus_534#1 ------------------------------------------------------------ consensus_534#0 TATATTAACACCGTTTCTTTCATATTTATCCAAAAATTTAATCAAATAATTAACGTAGGT 1069 consensus_534#1 ------------------------------------------------------------ consensus_534#0 TTCATAGTGGTCTTCTTTCAAATAAGTGATATTGTTGTCGAATTGTTTCATCCACAATG 1128 consensus_534#1 ----------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |