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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 517 fasta sequence
[AAAGATCGCTATTTATTATACTTAGTTTATTTTCTTCGTCTATATTCCCCACCTCTCCCTCTCTCTATCTCTTCCCTCTCTCGTTTTTTCCTCTTTTCTCCTTTCTCGAGCGCAAATCTATTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAAANNAAGAATGATCCCTGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAAAAAAAAAAAATAAAATAAAAATCGCACTATCTTTATCTTTATTTATTTCTGTAATAAGATTTATCGATGCTTAATGCTCATTAACGCTTTTCTTAGCAGTTTTGTTCGATTATTGTCGGCGTTCCTTTCTTGCGTAATTATCT]
[-] EMBL BI516171 [AAAGATCGCTATTTATTATACTTAGTTTATTTTCTTCGTCTATATTCCCCACCTCTCCCTCTCTCTATCTCTTCCCTCTCTCGTTTTTTCCTCTTTTCTCCTTTCTCGAGCGCAAATCTATTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAANNNAAGAATGATCCCTGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAATAAAATAAAATAAAATAAAAATCGCACTATCTTTATCTTTATTTATTTCTGTAATAAGATTTATCGATGCTTAATGCTCATTAACGCTTTTCTTAGCAGTTTTGTTCGATTATTGTCGGCGTTCCTTTCTTGCGTAATTATCT]
[+] EMBL BI509827 [ TCCTTTCTCGAGCGCAAATCTATTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAAAACAAGAATGATCCCCGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGAGGGACGATAATGGAAAAAAAAAAA ]
[-] EMBL BI505589 [ tttttTCTATTGTCTTCGGGGGAGGGAAAAAAAGAAAAAAAATAAANNAAGAATGATCCCTGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGG CGATAGCAACGATAATGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACT ]
consensusID : consensus_537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[CAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAATAAAATAAAATAAAATAAAACGAATAAAAGAAGAGAGACACTTGAAAGGATTACGTTACGAGAAAGCAAAATGATACAAGGAAGCAAAAAAACAAGGAGGATCGTTCGTCCCGTGAGAACATCCTCGCATTTACACTCTAATTACGGTTATTTTACGGGGATTAACCACGCGAGGAACGAGTAAGAAGAAGAA]
[-] EMBL BI516145 [CAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAATAAAATAAAATAAAATAAAACGAATAAAAGAAGAGAGACACTTGAAAGGATTACGTTACGAGAAAGCAAAATGATACAAGGAAGCAAAAAAACAAGGAGGATCGTTCGTCCCGTGAGAACATCCTCGCATTTACACTCTAATTACGGTTATTTTACGGGGATTAACCACGCGAGGAACGAGTAAGAAGAAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_537#0 AAAGATCGCTATTTATTATACTTAGTTTATTTTCTTCGTCTATATTCCCCACCTCTCCCT 60
consensus_537#1 ------------------------------------------------------------
consensus_537#0 CTCTCTATCTCTTCCCTCTCTCGTTTTTTCCTCTTTTCTCCTTTCTCGAGCGCAAATCTA 120
consensus_537#1 ------------------------------------------------------------
consensus_537#0 TTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAAANNAAGAATGATCCCTGTCTCGCG 180
consensus_537#1 ------------------------------------------------------------
consensus_537#0 TTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATA 240
consensus_537#1 -------------------CAACCACGGTGACGACGACACGATCGACGGGCGAAACGATA 41
*****************************************
consensus_537#0 TCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGT 300
consensus_537#1 TCGGCG-------ATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGT 94
****** ***********************************************
consensus_537#0 TACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGA 360
consensus_537#1 TACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGA 154
************************************************************
consensus_537#0 CGATAATGGAAAAAAAAAAAAAAATAAAATAAAA-----ATCGCACTATCTTTATCTTTA 415
consensus_537#1 CGATAATGGAAAAATAAAATAAAATAAAATAAAACGAATAAAAGAAGAGAGACACTTGAA 214
************** **** ************** * * * * * *
consensus_537#0 TTTATTTC--TGTAATAAGATTTATCGATGCTTA-ATGCTCATTAACGCTTTTCTTAGCA 472
consensus_537#1 AGGATTACGTTACGAGAAAGCAAAATGATACAAGGAAGCAAAAAAACAAGGAGGATCGTT 274
*** * * * ** * *** * * ** * *** * *
consensus_537#0 -GTTTTGTTCGATTATTGTCGGCGTTCCTTTCTTGC-GTAATTATCT------------- 517
consensus_537#1 CGTCCCGTGAGAACATCCTCGCATTTACACTCTAATTACGGTTATTTTACGGGGATTAAC 334
** ** ** ** *** ** * *** **** *
consensus_537#0 ---------------------------
consensus_537#1 CACGCGAGGAACGAGTAAGAAGAAGAA 361
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |