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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 893 fasta sequence
[ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATTCGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGATCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTTTCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTATTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTAGAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTCTTCTTTGAGAT]
[+] EMBL BI503272 [ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAA ]
[+] EMBL BI507025 [ CGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATTCGCGATTTAATAATCGTAACG ]
[+] EMBL BI515868 [ CTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGACGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGAGGTACAAAATTCGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGATCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTTTCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTATTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTAGAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTCTTCTTTGAGAT]
consensusID : consensus_538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence
[GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA]
[+] EMBL BI509105 [GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_538#0 ------ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGT 54
consensus_538#1 GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGT 60
******************************************************
consensus_538#0 GTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGC 114
consensus_538#1 GTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGC 120
************************************************************
consensus_538#0 AGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGA 174
consensus_538#1 AGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGA 180
************************************************************
consensus_538#0 GAAAGAGAGAGAGAG------------GTGCTTATTAGATCTCGAGATGATCTCTTAATA 222
consensus_538#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATA 240
** ************ *********************************
consensus_538#0 ATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAG 282
consensus_538#1 ATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA------ 294
******************************************************
consensus_538#0 ACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTC 342
consensus_538#1 ------------------------------------------------------------
consensus_538#0 ACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCAT 402
consensus_538#1 ------------------------------------------------------------
consensus_538#0 TTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTA 462
consensus_538#1 ------------------------------------------------------------
consensus_538#0 TTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTAT 522
consensus_538#1 ------------------------------------------------------------
consensus_538#0 CGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATT 582
consensus_538#1 ------------------------------------------------------------
consensus_538#0 CGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGA 642
consensus_538#1 ------------------------------------------------------------
consensus_538#0 TCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTT 702
consensus_538#1 ------------------------------------------------------------
consensus_538#0 TCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTA 762
consensus_538#1 ------------------------------------------------------------
consensus_538#0 TTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTA 822
consensus_538#1 ------------------------------------------------------------
consensus_538#0 GAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTC 882
consensus_538#1 ------------------------------------------------------------
consensus_538#0 TTCTTTGAGAT 893
consensus_538#1 -----------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |