These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [GCACGGCTTCGTTCGGGGATCGTCACCACGGACGGCCCTTTCGTCATCGGTGCTCGTCTCGAATCGTGTGTCGAAGTAATGACGAGGTTAAACCTCCGACCCGTCCTTTCCTCGCGCAGTCATCGCTTCGCTGCGTGACGTATCGTGCGATTGTTCTCGTCGTAGTCGTCGTCGTCGAAGGTTATNNNNNTNNNCCTCCTCCGATATTTCCTCCTTTCTTCCTCCTCTCCTCTTTTCGCCACCATTTTCTCCATTTTCTCGCTCCCGTGAGTTCATTGGAATTATTCGACTATTAATAACGCCGCGATCGTCGTGTCGTTGCACGATGGTGATTCCTGACCAAGCCTCGTTTTTCGCGAGATTTTCCTGAAGCTTCAGGAGGACGAACAGTGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGG] [+] EMBL BI503200 [GCACGGCTTCGTTCGGGGATCGTCACCACGGACGGCCCTTTCGTCATCGGTGCTCGTCTCGAATCGTGTGTCGAAGTAATGACGAGGTTAAACCTCCGACCCGTCCTTTCCTCGCGCAGTCATCGCTTCGCTGCGTGACGTATCGTGCGATTGTTCTCGTCGTAGTCGTCGTCGTCGAAGGTTATNNNNNTNNNCCTCCTCCGATATTTCCTCCTTTCTTCCTCCTCTCCTCTTTTCGCCACCATTTTCTCCATTTTCTCGCTCCCGTGAGTTCATTGGAATTATTCGACTATTAATAACGCCGCGATCGTCGTGTCGTTGCACGATGGTGATTCCTGACCAAGCCTCGTTTTTCGCGAGATTTTCCTGAAGCTTCAGGAGGACGAACAGTGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGG] consensusID : consensus_545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 226 fasta sequence [TCGAGTCTCGATGGACGAGAATAAAAACGAGAGAGATACGAACGAGGCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG] [+] EMBL BI508642 [TCGAGTCTCGATGGACGAGAATAAAAACGAGAGAGATACGATATATTCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG] [+] EMBL BI509385 [ cACGAGGCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG] [+] EMBL BI509540 [ ACGAGGCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_545#0 GCACGGCTTCGTTCGGGGATCGTCACCACGGACGGCCCTTTCGTCATCGGTGCTCGTCTC 60 consensus_545#1 ------------------------------------------------------------ consensus_545#0 GAATCGTGTGTCGAAGTAATGACGAGGTTAAACCTCCGACCCGTCCTTTCCTCGCGCAGT 120 consensus_545#1 ------------------------------------------------------------ consensus_545#0 CATCGCTTCGCTGCGTGACGTATCGTGCGATTGTTCTCGTCGTAGTCGTCGTCGTCGAAG 180 consensus_545#1 ------------------------------------------------------------ consensus_545#0 GTTATNNNNNTNNNCCTCCTCCGATATTTCCTCCTTTCTTCCTCCTCTCCTCTTTTCGCC 240 consensus_545#1 ------------------------------------------------------------ consensus_545#0 ACCATTTTCTCCATTTTCTCGCTCCCGTGAGTTCATTGGAATTATTCGACTATTAATAAC 300 consensus_545#1 ------------------------------------------------------------ consensus_545#0 GCCGCGATCGTCGTGTCGTTGCACGATGGTGATTCCTGACCAAGCCTCGTTTTTCGCGAG 360 consensus_545#1 -------TCGA-GTCTCGATGGACGAGAATAAAAAC-GAGAGAGATACGA-----ACGAG 46 *** ** *** ** **** * * * ** ** ** **** consensus_545#0 ATTTTCCTGAAGCTTCAGGAGGACGAACAGT---GTTTTAAGAGAGTGGATTAGAAGAGA 417 consensus_545#1 GCGCTC--GAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGA 104 ** **** ** * * ** * * ************************** consensus_545#0 AATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGA 477 consensus_545#1 AATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGA 164 ************************************************************ consensus_545#0 TGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGG---- 533 consensus_545#1 TGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAA 224 ******************************************************** consensus_545#0 -- consensus_545#1 GG 226 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |