Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 545 cluster # 545       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_545#0 length = 533 sequences # 1  
 consensus_545#1 length = 226 sequences # 3  
consensusID : consensus_545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence 
                              [GCACGGCTTCGTTCGGGGATCGTCACCACGGACGGCCCTTTCGTCATCGGTGCTCGTCTCGAATCGTGTGTCGAAGTAATGACGAGGTTAAACCTCCGACCCGTCCTTTCCTCGCGCAGTCATCGCTTCGCTGCGTGACGTATCGTGCGATTGTTCTCGTCGTAGTCGTCGTCGTCGAAGGTTATNNNNNTNNNCCTCCTCCGATATTTCCTCCTTTCTTCCTCCTCTCCTCTTTTCGCCACCATTTTCTCCATTTTCTCGCTCCCGTGAGTTCATTGGAATTATTCGACTATTAATAACGCCGCGATCGTCGTGTCGTTGCACGATGGTGATTCCTGACCAAGCCTCGTTTTTCGCGAGATTTTCCTGAAGCTTCAGGAGGACGAACAGTGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGG]

[+] EMBL BI503200             [GCACGGCTTCGTTCGGGGATCGTCACCACGGACGGCCCTTTCGTCATCGGTGCTCGTCTCGAATCGTGTGTCGAAGTAATGACGAGGTTAAACCTCCGACCCGTCCTTTCCTCGCGCAGTCATCGCTTCGCTGCGTGACGTATCGTGCGATTGTTCTCGTCGTAGTCGTCGTCGTCGAAGGTTATNNNNNTNNNCCTCCTCCGATATTTCCTCCTTTCTTCCTCCTCTCCTCTTTTCGCCACCATTTTCTCCATTTTCTCGCTCCCGTGAGTTCATTGGAATTATTCGACTATTAATAACGCCGCGATCGTCGTGTCGTTGCACGATGGTGATTCCTGACCAAGCCTCGTTTTTCGCGAGATTTTCCTGAAGCTTCAGGAGGACGAACAGTGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGG]




>consensus_545#0
GCACGGCTTCGTTCGGGGATCGTCACCACGGACGGCCCTTTCGTCATCGGTGCTCGTCTC
GAATCGTGTGTCGAAGTAATGACGAGGTTAAACCTCCGACCCGTCCTTTCCTCGCGCAGT
CATCGCTTCGCTGCGTGACGTATCGTGCGATTGTTCTCGTCGTAGTCGTCGTCGTCGAAG
GTTATNNNNNTNNNCCTCCTCCGATATTTCCTCCTTTCTTCCTCCTCTCCTCTTTTCGCC
ACCATTTTCTCCATTTTCTCGCTCCCGTGAGTTCATTGGAATTATTCGACTATTAATAAC
GCCGCGATCGTCGTGTCGTTGCACGATGGTGATTCCTGACCAAGCCTCGTTTTTCGCGAG
ATTTTCCTGAAGCTTCAGGAGGACGAACAGTGTTTTAAGAGAGTGGATTAGAAGAGAAAT
TAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGC
ATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGG

consensusID : consensus_545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 226
fasta sequence 
                              [TCGAGTCTCGATGGACGAGAATAAAAACGAGAGAGATACGAACGAGGCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG]

[+] EMBL BI508642             [TCGAGTCTCGATGGACGAGAATAAAAACGAGAGAGATACGATATATTCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG]
[+] EMBL BI509385             [                                        cACGAGGCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG]
[+] EMBL BI509540             [                                         ACGAGGCGCTCGAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG]




>consensus_545#1
TCGAGTCTCGATGGACGAGAATAAAAACGAGAGAGATACGAACGAGGCGCTCGAAGATTA
ATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGAAATTAAACGGTGTTTT
TTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGATGCATCGATTAATGAT
CGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_545#0      GCACGGCTTCGTTCGGGGATCGTCACCACGGACGGCCCTTTCGTCATCGGTGCTCGTCTC 60
consensus_545#1      ------------------------------------------------------------
                                                                                 

consensus_545#0      GAATCGTGTGTCGAAGTAATGACGAGGTTAAACCTCCGACCCGTCCTTTCCTCGCGCAGT 120
consensus_545#1      ------------------------------------------------------------
                                                                                 

consensus_545#0      CATCGCTTCGCTGCGTGACGTATCGTGCGATTGTTCTCGTCGTAGTCGTCGTCGTCGAAG 180
consensus_545#1      ------------------------------------------------------------
                                                                                 

consensus_545#0      GTTATNNNNNTNNNCCTCCTCCGATATTTCCTCCTTTCTTCCTCCTCTCCTCTTTTCGCC 240
consensus_545#1      ------------------------------------------------------------
                                                                                 

consensus_545#0      ACCATTTTCTCCATTTTCTCGCTCCCGTGAGTTCATTGGAATTATTCGACTATTAATAAC 300
consensus_545#1      ------------------------------------------------------------
                                                                                 

consensus_545#0      GCCGCGATCGTCGTGTCGTTGCACGATGGTGATTCCTGACCAAGCCTCGTTTTTCGCGAG 360
consensus_545#1      -------TCGA-GTCTCGATGGACGAGAATAAAAAC-GAGAGAGATACGA-----ACGAG 46
                            ***  ** *** ** ****   * *   * **   **   **       ****

consensus_545#0      ATTTTCCTGAAGCTTCAGGAGGACGAACAGT---GTTTTAAGAGAGTGGATTAGAAGAGA 417
consensus_545#1      GCGCTC--GAAGATTAATCAAATTAAAAATTACAGTTTTAAGAGAGTGGATTAGAAGAGA 104
                         **  **** ** *  *     ** * *   **************************

consensus_545#0      AATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGA 477
consensus_545#1      AATTAAACGGTGTTTTTTCGTGTACTTTTGTGCTTTCGAGCTACGAGCTACGTTTCACGA 164
                     ************************************************************

consensus_545#0      TGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGG---- 533
consensus_545#1      TGCATCGATTAATGATCGAGGGATGCGATCGAGGAGGGTGGCATGGAAAATGTGGGAAAA 224
                     ********************************************************    

consensus_545#0      --
consensus_545#1      GG 226


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)