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Apis mellifera
cluster # 547 cluster # 547       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_547#0 length = 651 sequences # 3  
consensus_547#1 length = 257 sequences # 1  

consensusID : consensus_547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 651
fasta sequence
                              [TTATTAGCGCGTGATGCACGCCAATGTTCGTAAGCCCGCGAAATCTGAGAAGACGCCGCGGCGCAAGAAGCTCGTAGAGCAACAAAGCAACGCTATGGATATGTTCGTGACACCAAAACGTCAGAAAAATGACGGTAATGGAAAAGATCAAAAGCCCGCTACTTCCAAAAAAACTATTCAACTAGGTCTACCCTCCGTTGTAGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGGTAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAAGTTGTTGGAACTCAACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGAACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTACTGGATTCTCTGCTTTGTGCACTGGGTCCTTTAATTTGTCTAACGCAACAGGTACCAGAAACTAATGGAGCTAAACACGAAACACTTTCGCAAATGCTTGACAATATTGCATATCTTATGCCTGGTTTGTAATATATGTATAAATACTCATAAAATAATTTAGTAATACATAATGTAAATATAAAAATTGAATAGATAAACATAGTCATTAAAATTATAAAATGAATGAATAATAG]

[+] EMBL BI505403             [TTATTAGCGCGTGATGCACGCCAATGTTCGTAAGCCCGCGAAATCTGAGAAGACGCCGCGGCGCAAGAAGCTCGTAGAGCAACAAAGCAACGCTATGGATATGTTCGTGACACCAAAACGTCAGAAAAATGACGGTAATGGAAAAGATCAAAAGCCCGCTACTTCCAAAAAAACTATTCAACTAGGTCTACCCTCCGTTGTAGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGGTAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAAGTTGTTGGAACTCAACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGAACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTACTGGATTCTCTGCTTTGTGCACTGGGTCCTTTAATTTGTCTAACGCAACAGGTACCAGAAACTAATGGAGCTAAACACGAAACACTTTCGCAAATGCTTGACAATATTGCATATCTTATGCCTGGTTTGTNATATATGTATAAATACTCATAAAATAATTTAGTAATACATAATCTAAATATAAAAATTGAAT                                           ]
[+] EMBL BI509450             [                                               AGAAGACGCCGCGGCGCAAGAAGCTCGTAGAGCAACAAAGCAACGCTATGGATATGTTCGTGACACCAAAACGTCAGAAAAATGACGGTAATGGAAAAGATCAAAAGCCCGCTACTTCCAAAAAAACTATTCAACTAGGTCTACCCTCCGTTGTAGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGGTAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAAGTTGTTGGAACTCAACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGAACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTACTGGATTCTCTGCTTTGTGCACTGGGTCCTTTAATTTGTCTAACGCAACAGGTACCAGAAACTAATGGAGCTAAACACGAAACACTTTCGCAAATGCTTGACAATATTGCATATCTTATGCCTGGTTTGTAATATATGTATAAATACTCATAAAATAATTTAGTAATACATAATGTAAATATAAAAATTGAATAGATAAACATAGTCATTAAA                       ]
[+] EMBL BI503175             [                                                                                                   ctgcTTCGCGAAAAAAATTCATTAATAAAAT  TGGTAATGGAAAAGATCAAAAGCCCGCTACTTCCAAAAAAACTATTCAACTAGGTCTACCCTCCGTTGTAGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGGTAAAGATTTGGTTAATGAACCAATGAT  GAACAGGAATGTATAAAGTTGTTGGAACTCAACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGAACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTACTGGATTCTCTGCTTTGTGCACTGGGTCCTTTAATTTGTCTAACGCAACAGGTACCAGAAACTAATGGAGCTAAACACGAAACACTTTCGCAAATGCTTGACAATATTGCATATCTTATGCCTGGTTTGTAATATATGTATAAATACTCATAAAATAATTTAGTAATACATAATGTAAATATAAAAATTGAATAGATAAACATAGTCATTAAAATTATAAAATGAATGAATAATAG]


>consensus_547#0 TTATTAGCGCGTGATGCACGCCAATGTTCGTAAGCCCGCGAAATCTGAGAAGACGCCGCG GCGCAAGAAGCTCGTAGAGCAACAAAGCAACGCTATGGATATGTTCGTGACACCAAAACG TCAGAAAAATGACGGTAATGGAAAAGATCAAAAGCCCGCTACTTCCAAAAAAACTATTCA ACTAGGTCTACCCTCCGTTGTAGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGG TAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAAGTTGTTGGAACTCA ACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGA ACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTACTGGA TTCTCTGCTTTGTGCACTGGGTCCTTTAATTTGTCTAACGCAACAGGTACCAGAAACTAA TGGAGCTAAACACGAAACACTTTCGCAAATGCTTGACAATATTGCATATCTTATGCCTGG TTTGTAATATATGTATAAATACTCATAAAATAATTTAGTAATACATAATGTAAATATAAA AATTGAATAGATAAACATAGTCATTAAAATTATAAAATGAATGAATAATAG



consensusID : consensus_547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence
                              [CGCTATGGATATGTTCGTGACACCAAAACGTCAGAAAAATGACGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGGTAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAANNNGTTGGAACTCAACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGAACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTAC]

[+] EMBL BI508394             [CGCTATGGATATGTTCGTGACACCAAAACGTCAGAAAAATGACGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGGTAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAANNNGTTGGAACTCAACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGAACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTAC]


>consensus_547#1 CGCTATGGATATGTTCGTGACACCAAAACGTCAGAAAAATGACGGAAATGTTCCGGTATC ACCGCCATCGAATCGAAGTGGTAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAAT GTATAAANNNGTTGGAACTCAACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGA GAGTTTAACAATCATCGGTGAACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGG CAGTCTATCGGTTTTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_547#0      TTATTAGCGCGTGATGCACGCCAATGTTCGTAAGCCCGCGAAATCTGAGAAGACGCCGCG 60
consensus_547#1      ------------------------------------------------------------
                                                                                 

consensus_547#0      GCGCAAGAAGCTCGTAGAGCAACAAAGCAACGCTATGGATATGTTCGTGACACCAAAACG 120
consensus_547#1      ------------------------------------------------------------
                                                                                 

consensus_547#0      TCAGAAAAATGACGGTAATGGAAAAGATCAAAAGCCCGCTACTTCCAAAAAAACTATTCA 180
consensus_547#1      ---------------------------------------CGCTATGGATATGTTCGTGAC 21
                                                              **    * *      *   

consensus_547#0      ACTAGGTCTACCCTCCGTTGTAGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGG 240
consensus_547#1      ACCAAAACGTCAGAAAAATGACGGAAATGTTCCGGTATCACCGCCATCGAATCGAAGTGG 81
                     ** *   *  *       **  **************************************

consensus_547#0      TAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAAGTTGTTGGAACTCA 300
consensus_547#1      TAAAGATTTGGTTAATGAACCAATGATAGGAACAGGAATGTATAAANNNGTTGGAACTCA 141
                     **********************************************   ***********

consensus_547#0      ACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGA 360
consensus_547#1      ACCTATCGATGTAGCTGCGCATCTAAAACTTCTCGGTGAGAGTTTAACAATCATCGGTGA 201
                     ************************************************************

consensus_547#0      ACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTACTGGA 420
consensus_547#1      ACGATTGAAGGAACATGATGGCCAAATAGCAGTATCAGGCAGTCTATCGGTTTTAC---- 257
                     ********************************************************    

consensus_547#0      TTCTCTGCTTTGTGCACTGGGTCCTTTAATTTGTCTAACGCAACAGGTACCAGAAACTAA 480
consensus_547#1      ------------------------------------------------------------
                                                                                 

consensus_547#0      TGGAGCTAAACACGAAACACTTTCGCAAATGCTTGACAATATTGCATATCTTATGCCTGG 540
consensus_547#1      ------------------------------------------------------------
                                                                                 

consensus_547#0      TTTGTAATATATGTATAAATACTCATAAAATAATTTAGTAATACATAATGTAAATATAAA 600
consensus_547#1      ------------------------------------------------------------
                                                                                 

consensus_547#0      AATTGAATAGATAAACATAGTCATTAAAATTATAAAATGAATGAATAATAG 651
consensus_547#1      ---------------------------------------------------
                                                                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)