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Apis mellifera
cluster # 555 cluster # 555       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_555#0 length = 519 sequences # 2  
 consensus_555#1 length = 445 sequences # 2  
consensusID : consensus_555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence 
                              [GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACCGATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATCGGCGACGGAGTCGTGGAGAGCATCATGAGAGGCGAGGTCGTCGGCATGACACCGAGGAGGTCGAGGTCANNNACTGCTCTGACGCACGCGCTTGTTGTGCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGCAGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGGCCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCCACGGCCCGTCTTGGTTGCGGAGG]

[+] EMBL BI503127             [GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACCGATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATCGGCGACGGAGTCGTGGAGAGCATCATGAGAGGCGAGGTCGTCGGCATGACACCGAGGAGGTCGAGGTCANNNACTGCTCTGACGCACGCGCTTGTTGTGCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGCAGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGGCCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCCACGGCCCGTCTTGGTTGCGGAGG]
[+] EMBL BI504367             [GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACCGATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATCGGCGACGGAGTCGTGGAGAGCATCATGAGAGGCGAGGTCGTCGGCATGACACCGAGGAGGTCGAGGTCATCGACTGCTCTGACGCACGCGCTTGTTGTGCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGCAGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGGCCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCC                       ]




>consensus_555#0
GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACCGATG
ACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATCGGCG
ACGGAGTCGTGGAGAGCATCATGAGAGGCGAGGTCGTCGGCATGACACCGAGGAGGTCGA
GGTCANNNACTGCTCTGACGCACGCGCTTGTTGTGCCGAGACCTGGAAGGAGGCCCCGAG
GACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTC
AGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGG
GTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGCAGCGGGCGAGGGTGGGAACG
TATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGGCCCCGCGTCGTCGGGCAGGC
CCGGCAATCGCGTGCCACGGCCCGTCTTGGTTGCGGAGG

consensusID : consensus_555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 445
fasta sequence 
                              [AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATATGTATGTATATATATATATATATATATACACATATATATATATACATATATCGGTTTCTCGTGACGCGTCACGCGCGATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGCTGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGCACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGG]

[+] EMBL BI509656             [AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATATGTATGTATATATATATATATATATATACACATATATATATATACATATATCGGTTTCTCGTGACGCGTCACGCGCGATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGCTGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGCACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGG]
[+] EMBL BI505219             [AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATATGTATGTATATATATATATATATATATACACATATATATATATACATATATCGGTTTCTCGTGACGCGTCACGCGCGATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGCTGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGCACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGT     ]




>consensus_555#1
AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATA
TGTATGTATATATATATATATATATATACACATATATATATATACATATATCGGTTTCTC
GTGACGCGTCACGCGCGATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGCTG
TGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGCAC
CATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAGAC
CTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGA
TACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGC
GGCGACGGGTGAGCGAGGGTGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_555#0      ------------------------------------------------------------
consensus_555#1      AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATA 60
                                                                                 

consensus_555#0      ----GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACC 56
consensus_555#1      TGTATGTATA-TATATATATATATATATACACATATATATATATACATATATCGGTTTCT 119
                          *** * *      **   *   ****   *       *   ** *  * **  * 

consensus_555#0      GATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATC 116
consensus_555#1      CGTGACGCGTCACGCGCG-ATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGC 178
                       **** *    * ** * *    **     *** *  *     *  ****    **  *

consensus_555#0      GGCGACGGA-GTCGTGGAG----AGCATCATGAGAGGCGAGGTCGTCGGCATGA-----C 166
consensus_555#1      TGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGC 238
                      * * *       *** *     ***   * *   *** *  *     * ** *     *

consensus_555#0      ACCGAGGAGGTCGA----GGTCANNNACTGCTCTGACGCAC--GCGCTTGTTGTGCCGAG 220
consensus_555#1      ACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAG 298
                     ***   * *  **             **    *    *  *   ***     *  *****

consensus_555#0      ACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAG 280
consensus_555#1      ACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAG 358
                     ************************************************************

consensus_555#0      GATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCG 340
consensus_555#1      GATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCG 418
                     ************************************************************

consensus_555#0      GCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGC 400
consensus_555#1      GCGGCGACGGGTGAGCGAGGGTGGTGG--------------------------------- 445
                     ***************************                                 

consensus_555#0      AGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGG 460
consensus_555#1      ------------------------------------------------------------
                                                                                 

consensus_555#0      CCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCCACGGCCCGTCTTGGTTGCGGAGG 519
consensus_555#1      -----------------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)