These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 879 fasta sequence [TTTTAAATTAAAAAACGACTGGACCACTCGGACGATCGTCGAAGCGGTAGTAAACGGTGTTGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTGTCACAAAATTATCTACTTAAGCAATAACGCATTACCCCATGTAATAATCATTTAAAAAAAAAATGATTCCAGGTTCCCATGAAACTCGTTCTATGCATGGAATAACCTGATAATAAAAGGCCAACTATATAAAATGCGCGCGATCAATCGATCAGGATTGCTCAAGAAACTAGAAACGAGTCAATAACGAGTCAATAAAATTCGTAAGTCTCGTTAAGTTTAA] [+] EMBL BI506406 [TTTTAAATTAAAAAACGACTGGACCACTCGGACGATCGTCGAAGCGGTAGTAAACGGTGTTGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTGTCACAAAATTATCTACTTAA ] [+] EMBL BI503122 [ ATCGTCGAAGCGGTAGTAAACGGTGTTGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATT ] [-] EMBL BI511486 [ AACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATANCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTGTCACAAAATTATCTACTTAAGCAATAACGCATTACCCCATGTAATAATCATTTAAAAAAAAAATGATTCCAGGTTCCCATGAAACTCGTTCTATGCATGGAATAACCTGATAATAAAAGGCCAACTATATAAAATGCGCGCGATCAATCGATCAGGATTGCTCAAGAAACTAGAAACGAGTCAATAACGAGTCAATAAAATTCGTAAGTCTCGTTAAGTTTAA] consensusID : consensus_556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAATAAAAGAGAGAAGGAAAAAATTATTGATTCGATATCTAGAAGAAAAGAAATAATCTTCTTTTTAGATTGATTTAAACGAAAAATTATGTATATACGTAAAATGATCCTTAATGTGGGAAAAAATTTTATGTATTTGAGAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGTAATAG] [+] EMBL BI508660 [CGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAATAAAAGAGAGAAGGAAAAAATTATTGATTCGATATCTAGAAGAAAAGAAATAATCTTCTTTTTAGATTGATTTAAACGAAAAATTATGTATATACGTAAAATGATCCTTAATGTGGGAAAAAATTTTATGTATTTGAGAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGTAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_556#0 TTTTAAATTAAAAAACGACTGGACCACTCGGACGATCGTCGAAGCGGTAGTAAACGGTGT 60 consensus_556#1 ------------------------------------------------------------ consensus_556#0 TGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGA 120 consensus_556#1 ---------CGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGA 51 *************************************************** consensus_556#0 TATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCC 180 consensus_556#1 TATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCC 111 ************************************************************ consensus_556#0 AGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGT 240 consensus_556#1 AGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGT 171 ************************************************************ consensus_556#0 ATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGA 300 consensus_556#1 ATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGA 231 ************************************************************ consensus_556#0 TGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAA 360 consensus_556#1 TGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAA 291 ************************************************************ consensus_556#0 ATATCAAATATGTAA---AAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAA 417 consensus_556#1 ATATCAAATATGTAATAAAAGAGAGAAGGAAAAAATT---ATTGATTCGATATCTAGAAG 348 *************** ******************* ******** ********** consensus_556#0 AGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTA 477 consensus_556#1 AAAA----GAAATAATCTTCTTTTTAGATTGATTTAAACGAAAAATTATGTATATACGTA 404 * ** ****** ******************** ******************** consensus_556#0 AAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATT-GAAAAATATACAT 536 consensus_556#1 AAATGATCCTTAATGTGGGAAAAAATTT----------TATGTATTTGAGAAATATACAT 454 ************** ** ******** * ******** ** ********** consensus_556#0 TTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAA 596 consensus_556#1 TTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGTAATAG------ 508 ************************************************ *** * consensus_556#0 ATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTG 656 consensus_556#1 ------------------------------------------------------------ consensus_556#0 TCACAAAATTATCTACTTAAGCAATAACGCATTACCCCATGTAATAATCATTTAAAAAAA 716 consensus_556#1 ------------------------------------------------------------ consensus_556#0 AAATGATTCCAGGTTCCCATGAAACTCGTTCTATGCATGGAATAACCTGATAATAAAAGG 776 consensus_556#1 ------------------------------------------------------------ consensus_556#0 CCAACTATATAAAATGCGCGCGATCAATCGATCAGGATTGCTCAAGAAACTAGAAACGAG 836 consensus_556#1 ------------------------------------------------------------ consensus_556#0 TCAATAACGAGTCAATAAAATTCGTAAGTCTCGTTAAGTTTAA 879 consensus_556#1 ------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |