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Apis mellifera
cluster # 556 cluster # 556       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_556#0 length = 879 sequences # 3  
consensus_556#1 length = 508 sequences # 1  

consensusID : consensus_556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 879
fasta sequence
                              [TTTTAAATTAAAAAACGACTGGACCACTCGGACGATCGTCGAAGCGGTAGTAAACGGTGTTGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTGTCACAAAATTATCTACTTAAGCAATAACGCATTACCCCATGTAATAATCATTTAAAAAAAAAATGATTCCAGGTTCCCATGAAACTCGTTCTATGCATGGAATAACCTGATAATAAAAGGCCAACTATATAAAATGCGCGCGATCAATCGATCAGGATTGCTCAAGAAACTAGAAACGAGTCAATAACGAGTCAATAAAATTCGTAAGTCTCGTTAAGTTTAA]

[+] EMBL BI506406             [TTTTAAATTAAAAAACGACTGGACCACTCGGACGATCGTCGAAGCGGTAGTAAACGGTGTTGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTGTCACAAAATTATCTACTTAA                                                                                                                                                                                                           ]
[+] EMBL BI503122             [                                  ATCGTCGAAGCGGTAGTAAACGGTGTTGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATT                                                                                                                                                                                                                                                       ]
[-] EMBL BI511486             [                                                                                                                                                                                                                                                                                                                                                               AACTCATAAATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATANCTAGAAAAGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTGTCACAAAATTATCTACTTAAGCAATAACGCATTACCCCATGTAATAATCATTTAAAAAAAAAATGATTCCAGGTTCCCATGAAACTCGTTCTATGCATGGAATAACCTGATAATAAAAGGCCAACTATATAAAATGCGCGCGATCAATCGATCAGGATTGCTCAAGAAACTAGAAACGAGTCAATAACGAGTCAATAAAATTCGTAAGTCTCGTTAAGTTTAA]


>consensus_556#0 TTTTAAATTAAAAAACGACTGGACCACTCGGACGATCGTCGAAGCGGTAGTAAACGGTGT TGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGA TATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCC AGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGT ATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGA TGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAA ATATCAAATATGTAAAAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAAAGA AATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTAAAA TGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATTGAAAAATATACATTTTG AGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAAATGC TCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTGTCAC AAAATTATCTACTTAAGCAATAACGCATTACCCCATGTAATAATCATTTAAAAAAAAAAT GATTCCAGGTTCCCATGAAACTCGTTCTATGCATGGAATAACCTGATAATAAAAGGCCAA CTATATAAAATGCGCGCGATCAATCGATCAGGATTGCTCAAGAAACTAGAAACGAGTCAA TAACGAGTCAATAAAATTCGTAAGTCTCGTTAAGTTTAA



consensusID : consensus_556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence
                              [CGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAATAAAAGAGAGAAGGAAAAAATTATTGATTCGATATCTAGAAGAAAAGAAATAATCTTCTTTTTAGATTGATTTAAACGAAAAATTATGTATATACGTAAAATGATCCTTAATGTGGGAAAAAATTTTATGTATTTGAGAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGTAATAG]

[+] EMBL BI508660             [CGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAATATGTAATAAAAGAGAGAAGGAAAAAATTATTGATTCGATATCTAGAAGAAAAGAAATAATCTTCTTTTTAGATTGATTTAAACGAAAAATTATGTATATACGTAAAATGATCCTTAATGTGGGAAAAAATTTTATGTATTTGAGAAATATACATTTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGTAATAG]


>consensus_556#1 CGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGATATAAATTA ACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCCAGTCAAGAC AAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGTATATGTACA AATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGATGACAAGAT TACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAAATATCAAAT ATGTAATAAAAGAGAGAAGGAAAAAATTATTGATTCGATATCTAGAAGAAAAGAAATAAT CTTCTTTTTAGATTGATTTAAACGAAAAATTATGTATATACGTAAAATGATCCTTAATGT GGGAAAAAATTTTATGTATTTGAGAAATATACATTTTGAGTAAAGGAGAAATTAAATGTA TATATACAATTCAATTCCAATGTAATAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_556#0      TTTTAAATTAAAAAACGACTGGACCACTCGGACGATCGTCGAAGCGGTAGTAAACGGTGT 60
consensus_556#1      ------------------------------------------------------------
                                                                                 

consensus_556#0      TGTTCCTGGCGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGA 120
consensus_556#1      ---------CGCTTCGACGCGAGCTCAAAGATGAAAACGTGATACATTAATTTTCGCTGA 51
                              ***************************************************

consensus_556#0      TATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCC 180
consensus_556#1      TATAAATTAACGATTCGGCTCATGTCTGATGTAGTAGAACTGTAGTCATACGTACTCTCC 111
                     ************************************************************

consensus_556#0      AGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGT 240
consensus_556#1      AGTCAAGACAAAAGCAATACTCGAATATAGAATAATTTTTCATATGTAATGTCCATGAGT 171
                     ************************************************************

consensus_556#0      ATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGA 300
consensus_556#1      ATATGTACAAATATTTGAACACCTTTATGTATGAAAACTTCGATAATTGACCATATTCGA 231
                     ************************************************************

consensus_556#0      TGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAA 360
consensus_556#1      TGACAAGATTACACGTTGCGAGTGAAGTTTATTAACTCAATAAATGCTCAAAACTCATAA 291
                     ************************************************************

consensus_556#0      ATATCAAATATGTAA---AAGAGAGAAGGAAAAAATTAAAATTGATTCCATATCTAGAAA 417
consensus_556#1      ATATCAAATATGTAATAAAAGAGAGAAGGAAAAAATT---ATTGATTCGATATCTAGAAG 348
                     ***************   *******************   ******** ********** 

consensus_556#0      AGAAATAAAGAATAATTTTCTTTTTAGATTGATTTAACGAAAAAATTATGTATATACGTA 477
consensus_556#1      AAAA----GAAATAATCTTCTTTTTAGATTGATTTAAACGAAAAATTATGTATATACGTA 404
                     * **      ****** ********************   ********************

consensus_556#0      AAATGATCCTTAATATGAGAAAAAATGTATTGAAAAATTATGTATT-GAAAAATATACAT 536
consensus_556#1      AAATGATCCTTAATGTGGGAAAAAATTT----------TATGTATTTGAGAAATATACAT 454
                     ************** ** ******** *          ******** ** **********

consensus_556#0      TTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGGAATGGAACGAA 596
consensus_556#1      TTTGAGTAAAGGAGAAATTAAATGTATATATACAATTCAATTCCAATGTAATAG------ 508
                     ************************************************ *** *      

consensus_556#0      ATGCTCAATGGCAATTAAAAAAGGATATGAGAGATTTGAGCATCTTGTTGAGTGTCATTG 656
consensus_556#1      ------------------------------------------------------------
                                                                                 

consensus_556#0      TCACAAAATTATCTACTTAAGCAATAACGCATTACCCCATGTAATAATCATTTAAAAAAA 716
consensus_556#1      ------------------------------------------------------------
                                                                                 

consensus_556#0      AAATGATTCCAGGTTCCCATGAAACTCGTTCTATGCATGGAATAACCTGATAATAAAAGG 776
consensus_556#1      ------------------------------------------------------------
                                                                                 

consensus_556#0      CCAACTATATAAAATGCGCGCGATCAATCGATCAGGATTGCTCAAGAAACTAGAAACGAG 836
consensus_556#1      ------------------------------------------------------------
                                                                                 

consensus_556#0      TCAATAACGAGTCAATAAAATTCGTAAGTCTCGTTAAGTTTAA 879
consensus_556#1      -------------------------------------------
                                                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)