These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACACATGTACGTTTAAACGTGTTTGTATATTTTCCATGTATATAC] [+] EMBL BI503018 [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTAGCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACACATGTACGTTTAAACGTGTTTGTATATTTTCCATGTATATAC] [+] EMBL BI504726 [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACA ] consensusID : consensus_572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence [TTGTATAATTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGNNNTTTGCTGTAACTTAGATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGANNNATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAACGGNNGGATACAAATGGTGTGAATATTAAGGCGCTACTATTTTTTAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT] [+] EMBL BI516446 [TTTTTTTTTTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGNNNTTTGCTGTAACTTAAATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGANNNATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAA ] [+] EMBL BI516508 [ GTATAATTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGGTGTTTGCTGTAACTTAGATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGAAGAATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAACGGNNGGATACAAATGGTGTGAATATTAAGGCGCTACTATTTTTTAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_572#0 TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTG 60 consensus_572#1 TTGTATAATTTTTCTTTTACGCTTTGT-ATTGGAAAATCGTAAAGGATATATTCAATTTC 59 * ** ** ** * ** * * * ** *** ** * ** *** consensus_572#0 CATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTT 120 consensus_572#1 ATCAAGCGATATTCGCAAAACA--GCCGNNNTTTGCTGTAACTTAG-ATAACAA-ATTGC 115 * * * * * * * *** ** *** ** * * * * consensus_572#0 AAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATA 180 consensus_572#1 AGATCACAG-GTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCA 174 * * **** *** * * * **** ** * ***** * * * *** * consensus_572#0 TATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATA 240 consensus_572#1 AAAAGAAAACTATTGATAACCAAGTCTG---ATGCAAGGGCG-ACGGTTCTTCCTAT-TA 229 * * * *** *** ** * * ** * ** * * * ** ** consensus_572#0 AAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCAT 300 consensus_572#1 TTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAA 289 * **** * ***** *** ** ** ** * ** ** * * * **** consensus_572#0 TTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACAT 360 consensus_572#1 CTGTATGAAGAAAAAAATACATT-CGTAATTAAAGANNNATGAGAGTGAACAGTCAAAAC 348 * * ****** *** * * * * *** * * * * * ** * consensus_572#0 ATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGG 420 consensus_572#1 ATAAC--ATTACGAA--ATAATTCGTAATGTAAA---ATATGTTGAAATTAGGAAAACGG 401 ** *** ** ****** **** * * * ** ** * *** * * *** consensus_572#0 TTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAA 480 consensus_572#1 NNGGATACAAA---TGGTGTGAATAT----TAAGGCGCTACTATTTT-TTAAACTAGTTA 453 **** ** * **** ** ** * ** *** ** ** * * * consensus_572#0 AAAAATACCATGTATATTGTATTTGACT-CGCATGAAACACATGTACGTTTAAACGTGTT 539 consensus_572#1 TTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT---------------- 497 * * *** * * * * * * ** ** * * consensus_572#0 TGTATATTTTCCATGTATATAC 561 consensus_572#1 ---------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |