These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1050 fasta sequence [TGTTGGAGCGGCCTCTTCTATACAAATACGTCATTTGTATAGAAGAGGCCTGCTNNNCATCGTTGCTGAATAGGTCGATAAATAGTTTTAGTACAGAATGAGGTGGCGACGGTTCGTGATCGAATATTCGCACAGGATCCTCTTCTCTATTAAATAAAAGTAAGATCTTTTCAGTAAAATTTTTTGCCACTGTTCTTTCCTTTAACGCATTCAAAACTATATTTTCCGAGTTAGTGAATTGTAAATTGTATGATAATATTAAATTTACAAATAAATCCGGAATTTGATCTTCCAAGTCCATATCAGGAGGATTTTCTATTAAATCCAAAATAAATGTTATAAAATCTGGACCTAATTGTTCCAAATGTGTAACTGGCATAGGTTCACCCATTGAAAAAATCATAGTAAGTAATAATGAAGAATAATTTAATTTTGTTACATTTCTGGAATTACTCCTCATATCTCTTGCTAATTCCATAGGTAATATACTATTTAACATTATAGTTAAGATAACAGAATCTAAACTACACATTACTCCAAATGATTGCAAGAGTAATTGCCTAATAGTCCATCTTGGTTCCATTTGATAATATTGTATCAGTATATTAACTCCATTATATTGATTCTGCTGTAAAACATATCTAGATACGTTTGCATCTGCATTGGTCAATATAGAAGTAAGTTCCTTTATATAATCAACAATAATAGATTCATCTTCATAAAGCATCCAATTTCTCTGTTGAGAATCTTCTTTACAAGAAGTAAGCTCTGTAAAAATCACTTTCAATCTATTAGCATCATATGTTTCCTCTATGCTCATTTGTGATACAGTAAATGGTGTTTCTAATTGATGCAATAATGCATCAAAATAATGGCTCACATTTTGAGGCAATAATTGTTGCAGGCCAGAAACAACTACTGTTACTGCTACTTTTGACATTTCATAACTTAATTGAGTATTCCTACGTACTTGGTCAAGTAATTGATAAGCAGTATGAGAGTTAATATCACATAATGAAGTTTTTTTCTTTATAGGTGAACTAATGGGGG] [+] EMBL BI505830 [TGTTGGAGCGGCCTCTTCTATACAAATACGTCATTTGTATAGAAGAGGCCTGCTNNNCATCGTTGCTGAATAGGTCGATAAATAGTTTTAGTACAGAATGAGGTGGCGACGGTTCGTGATCGAATATTCGCACAGGATCCTCTTCTCTATTAAATAAAAGTAAGATCTTTTCAGTAAAATTTTTTGCCACTGTTCTTTCCTTTAACGCATTCAAAACTATATTTTCCGAGTTAGTGAATTGTAAATTGTATGATAATATTAAATTTACAAATAAATCCGGAATTTGATCTTCCAAGTCCATATCAGGAGGATTTTCTATTAAATC ] [-] EMBL BI510207 [ CTTTTCAGTAAAATTTTTTGCCACTGTTCTTTCCTTTAACGCATTCAAAACTATATTTTCCGAGTTAGTGAATTGTAAATTGTATGATAATATTAAATTTACAAATAAATCCGGAATTTGATCTTCCAAGTCCATATCAGGAGGATTTTCTATTAAATCCAAAATAAATGTTATAAAATCTGGACCTAATTGTTCCAAATGTGTAACTGGCATAGGTTCACCCATTGAAAAAATCATAGTAAGTAATAATGAAGAATAATTTAATTTTGTTACATTTCTGGAATTACTCCTCATATCTCTTGCTAATTCCATAGGTAATATACTATTTAACATTATAGTTAAGATAACAGAATCTAAACTACACATTACTCCAAATGATTGCAAGAGTAATTGCCTAATAGTCCATCTTGGTTCCATTTGATAATATTGTATCAGTATATTAACTCCATTATATTGATTCTGCTGTAAAACATATCTAGATACGTTTGCATCTGCATTGGTCAATATAGAAGTAAGTTCCTTTATATAATCAACAATAATAGATTCATCTTCATAAAGCATCCAATTTCTCTGTTGAGAATCTTCTTTACAAGAAGTAAGC ] [-] EMBL BI517098 [ TTGTATCAGTATATTAACTCCATTATATTGATTCTGCTGTAAAACATATCTAGATACGTTTGCATCTGCATTGGTCAATATAGAAGTAAGTTCCTTTATATAATCAACAATAATAGATTCATCTTCATAAAGCATCCAATTTCTCTGTTGAGAATCTTCTTTACAAGAAGTAAGCTCTGTAAAAATCACTTTCAATCTATTAGCATCATATGTTTCCTCTATGCTCATTTGTGATACAGTAAATGGTGTTTCTAATTGATGCAATAATGCATCAAAATAATGGCTCACATTTTGAGGCAATAATTGTTGCAGGCCAGAAACAACTACTGTTACTGCTACTTTTGACATTTCATAACTTAATTGAGTATTCCTACGTACTTGGTCAAGTAATTGATAAGCAGTATGAGAGTTAATATCACATAATGAAGTTTTTTTCTTTATAGGTGAACTAATGGGGG] consensusID : consensus_573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [TCATTCTGTACTAAAACTATTTATCGACCTATTCAGCAACGATGTTACAGCAGGCCTCTTCTATACAAATGACGTATTTGTTTTAATCGATATTATATTGCGTCAATTATACGATATGTTTCCCGGTGATAAGCGTAGACAATATTTGGAATTATGTCGAAGAGTATTACGTACGTCGAGCTATAATGAACATAAATATCGTTCAGAAGATCTCTTGAAATGCTTTACAAGAATATTCTGTGAAGAAACTGGAGAGAGTCAAGAAGATCAACAATCAGTGCGTGAAATTAGCAATGAATTTCCACATTTGTTTAAAATGTGACCTTTATCGTCGCCCTCCGATAATAAAAACTTGGAGGATGATGATTTGCAAACTCTTATATAAGGTTCCGGTACGTACAATGACGAAGAATGACGAAGAATCAAGTTACCGATCAAAAAAATTTCTTTATTTTTCTAATACTATTTTGCAAATATTTTGCTCAGCCAATAATATATCAAAGACGCACACACAATTCGCAGAACTTTCAAGTGCATGAAATTATATTTTTCCCGTTTTAATCTTTCTAGTAAACATTACTATTTATTCTGATTAAAAAAAA] [+] EMBL BI510439 [TCATTCTGTACTAAAACTATTTATCGACCTATTCAGCAACGATGTTACAGCAGGCCTCTTCTATACAAATGACGTATTTGTTTTAATCGATATTATATTGCGTCAATTATACGATATGTTTCCCGGTGATAAGCGTAGACAATATTTGGAATTATGTCGAAGAGTATTACGTACGTCGAGCTATAATGAACATAAATATCGTTCAGAAGATCTCTTGAAATGCTTTACAAGAATATTCTGTGAAGAAACTGGAGAGAGTCAAGAAGATCAACAATCAGTGCGTGAAATTAGCAATGAATTTCCACATTTGTTTAAAATGTGACCTTTATCGTCGCCCTCCGATAATAAAAACTTGGAGGATGATGATTTGCAAACTCTTATATAAGGTTCCGGTACGTACAATGACGAAGAATGACGAAGAATCAAGTTACCGATCAAAAAAATTTCTTTATTTTTCTAATACTATTTTGCAAATATTTTGCTCAGCCAATAATATATCAAAGACGCACACACAATTCGCAGAACTTTCAAGTGCATGAAATTATATTTTTCCCGTTTTAATCTTTCTAGTAAACATTACTATTTATTCTGATTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_573#0 TGTTGGAGCGGCCTCTTCTATACAAATACGTCATTTGTATAGAAGAGGCCTGCTNNNCAT 60 consensus_573#1 ------------------------------------------------------------ consensus_573#0 CGTTGCTGAATAGGTCGATAAATAGTTTTAGTACAGAATGAGGTGGCGACGGTTCGTGAT 120 consensus_573#1 ------------------------------------------------------------ consensus_573#0 CGAATATTCGCACAGGATCCTCTTCTCTATTAAATAAAAGTAA-GATCTTTTCAGTAAAA 179 consensus_573#1 -------------------TCATTCTGTACTAAAACTATTTATCGACCTATTCAGCAACG 41 **** ** **** * ** ** ** ***** ** consensus_573#0 TTTTTTGCCACTGTTCTTTCCTTTAACGCATTCAAAACTATATTTTCCGAGTTAGTGAAT 239 consensus_573#1 ATGTT-ACAGCAGGCCTCTTCTATACAAATGACGTATTTGTTTTAATCGATATTATATTG 100 * ** * * * ** * ** ** * * * * ** *** * * consensus_573#0 TGTAAATTGTATGATAATATTAAATTTACAAATAAATCCGGAATTTGATCTTCCAAGTCC 299 consensus_573#1 CGTCAATTATACGATATGTTT---CCCGGTGATAAGCGTAGA---CAATATTTGGAATT- 153 ** **** ** **** ** **** ** ** ** * * consensus_573#0 ATATC-AGGAGGATTTTCTAT-TAAATCCAAAATAAATGTTA-TAAAATCTGGACCTAAT 356 consensus_573#1 ATGTCGAAGAGTATTACGTACGTCGAGCTATAATGAACATAAATATCGTTCAGA--AGAT 211 ** ** * *** *** ** * * * * *** ** * * ** * ** ** consensus_573#0 TGTTCCAAATGTGTAACTGGCATAGGTTCACCCATTGAAAAAATCATAGTAAGTAATAAT 416 consensus_573#1 CTCTTGAAATGCTTTACAAGAAT------ATTCTGTGAAGAAACTGGAGAGAGTCAAGAA 265 * ***** * ** * ** * * **** *** ** *** * * consensus_573#0 GAAGAATAATTTAATTTTGTTACATTTCTGGAATTACTCCTCATATCTCTTGCTAATTCC 476 consensus_573#1 GATCAACAATC--AGTGCGTGAAATT--AGCAATGAATTTCCACATTTGTTTAAAATGTG 321 ** ** *** * * ** * *** * *** * * ** ** * ** *** consensus_573#0 ATAGGTAATAT-ACTATTTAACATTATAGTTAAGATAACAGAATCTAAACTACACATTAC 535 consensus_573#1 ACCTTTATCGTCGCCCTCCGATAATAAA---AACTTGGAGGATGATGATTTGCAAACTCT 378 * ** * * * * * ** * ** * ** * * * ** * * consensus_573#0 TCCAAATGATTGCAAGAGTAATTGCCTAATAGTCCATCTTGGTTCCATTTGATAATATTG 595 consensus_573#1 TATATAAGGTTCCGGTA-----CGTACAATGACGAAGAATGACGAAGAATCAAGTTACCG 433 * * * * ** * * * *** * ** * * ** * consensus_573#0 TATCAGTATATTAACTCCATTATATTGATTCTGCTGTAAAACATATCTAGATACGTTTGC 655 consensus_573#1 -ATCAAAAAAATTTCTTTATTTTTCTAATACTATTTTGCAA-ATAT---------TTTGC 482 **** * * * ** *** * * ** ** * * ** **** ***** consensus_573#0 ATCTGCATTGGTCAATATAGAAGTAAGTTCCTTTATATAATCAACAATAATAGATTCATC 715 consensus_573#1 -------TCAGCCAATAATATATCAAAGACGCACACACAATTCGCAGAACT---TTCAAG 532 * * ***** * ** * * * *** ** * * **** consensus_573#0 TTCATAAAGCATCCAATTTCTCTGTTGAGAATCTTCTTTACAAGAAGTAAGCTCTGTAAA 775 consensus_573#1 TGCATGAA--ATTATATTTTTCCCGTTTTAATCTTTCTAGTAAACATTACTATTTATTCT 590 * *** ** ** **** ** * ****** * ** * ** * * * consensus_573#0 AATCACTTTCAATCTATTAGCATCATATGTTTCCTCTATGCTCATTTGTGATACAGTAAA 835 consensus_573#1 GATTAAAAAAAA------------------------------------------------ 602 ** * ** consensus_573#0 TGGTGTTTCTAATTGATGCAATAATGCATCAAAATAATGGCTCACATTTTGAGGCAATAA 895 consensus_573#1 ------------------------------------------------------------ consensus_573#0 TTGTTGCAGGCCAGAAACAACTACTGTTACTGCTACTTTTGACATTTCATAACTTAATTG 955 consensus_573#1 ------------------------------------------------------------ consensus_573#0 AGTATTCCTACGTACTTGGTCAAGTAATTGATAAGCAGTATGAGAGTTAATATCACATAA 1015 consensus_573#1 ------------------------------------------------------------ consensus_573#0 TGAAGTTTTTTTCTTTATAGGTGAACTAATGGGGG 1050 consensus_573#1 ----------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |