cluster # 585

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Apis mellifera
cluster # 585 cluster # 585 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_585#0 length = 583 sequences # 2

consensus_585#1 length = 490 sequences # 1
consensus_585#2 length = 304 sequences # 1

consensusID : consensus_585#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 583
fasta sequence

                              [ATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATACATATATATACATATATATATTTTGACTTGTTCTTCCTTTCATCGAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATGTATATAT]

[+] EMBL BI502908             [ATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATACATATATATACATATATATATTTTGACTTGTTCTTCCTTTCATCGAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATATATATA ]
[+] EMBL BI510181             [                                                                                                                                                                                                                                                                                                                                       ATATTTTGACTTGTTCTTCCTTTCATCGAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATGTATATAT]




>consensus_585#0
ATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATAT
ATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGA
CATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAG
TTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGA
TGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAA
TATATATATACATATATATACATATATATATTTTGACTTGTTCTTCCTTTCATCGAGTTG
TTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTATATATA
TTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCT
CGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCA
CAAACTATCGCATATATATATATATATATTTATATGTATATAT

consensusID : consensus_585#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [GCGGAAATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCTTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATATA]

[+] EMBL BI509055             [GCGGAAATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCTTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATATA]




>consensus_585#1
GCGGAAATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAAT
ATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTT
CTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACT
CCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCG
GTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATATTATATTA
ATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCG
AAACACGCTCGAGAACGCTTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTAT
CGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATA
TATATATATA

consensusID : consensus_585#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [CATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACAATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATA]

[+] EMBL BI504445             [CATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACAATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATA]




>consensus_585#2
CATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTT
AATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATTATATTAATTA
AATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAAC
ACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACAATCGCA
TATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATA
TATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_585#1      GCGGAAATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAAT 60
consensus_585#2      ------------------------------------------------------------
consensus_585#0      ------ATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAAT 54
                                                                                 

consensus_585#1      ATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTT 120
consensus_585#2      ------------------------------------------------------------
consensus_585#0      ATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTT 114
                                                                                 

consensus_585#1      CTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACT 180
consensus_585#2      ------------------------------------------------------------
consensus_585#0      CTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACT 174
                                                                                 

consensus_585#1      CCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCG 240
consensus_585#2      --------------------------CATTGTACTCGGTTCAGCGTCGATTTAGAGATCG 34
consensus_585#0      CCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCG 234
                                               **********************************

consensus_585#1      GTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATA-------- 292
consensus_585#2      GTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGA 94
consensus_585#0      GTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGA 294
                     ****************************************************        

consensus_585#1      ------------------------------------------------------------
consensus_585#2      TATTAATATATATA---------------------------------------------- 108
consensus_585#0      TATTAATATATATATACATATATATACATATATATATTTTGACTTGTTCTTCCTTTCATC 354
                                                                                 

consensus_585#1      ------------------------------------------------------------
consensus_585#2      ------------------------------------------------------------
consensus_585#0      GAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTA 414
                                                                                 

consensus_585#1      ------TTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCG 346
consensus_585#2      ------TTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCG 162
consensus_585#0      TATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCG 474
                           ******************************************************

consensus_585#1      GTTTCTCGCCATCGAAACACGCTCGAGAACGCTTGTCCACGTACGTGCGCGCGCGCGCTC 406
consensus_585#2      GTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTC 222
consensus_585#0      GTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTC 534
                     ******************************** ***************************

consensus_585#1      GTTCCACAAACTATCGCATATATATATATATATATTTATATATATATATATATATATATA 466
consensus_585#2      GTTCCACAAACAATCGCATATATATATATATATATTTATATATATATATATATATATATA 282
consensus_585#0      GTTCCACAAACTATCGCATATATATATATATATATTTATATGTATATAT----------- 583
                     *********** ***************************** *******           

consensus_585#1      TATATATATATATATATATATATA 490
consensus_585#2      TATATATATATATATATATATA-- 304
consensus_585#0      ------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)