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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 706 fasta sequence
[GTTTTTAAATCTCGGGATAACTTCATGTAAACAGTTACTATATATCAATACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGTGGAAAAAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCAAAAAAGAAATGTATATCATTTTCTTCTTGAATTCCTTGTGGTAT]
[+] EMBL BI514869 [GTTTTTAAATCTCGGGATAACTTCATGTAAACAGTTACTATATATCAATACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGTGGAAAAAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCNNGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCANTTATAAATTTTAAGAAATATCTTTTGTCAAT ]
[+] EMBL BI510183 [ AGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAATACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCNACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCAAAAAAAAAA ]
[+] EMBL BI509586 [ CATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCGAAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGCAACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAATCGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCTAAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCTTTTGTCAATAATAAAGTATTGAAGAAAATATTGTTGCTTGTAATTAATTATTTTTATTATAAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTATTCTTTTTTATATACTTCATATACGAATTGTATATCATTTTCTTCTTGAATTCCTTGTGGTAT]
consensusID : consensus_588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence
[TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAATATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAACTGCTACTATGAACACGTAAAATTTGAAATATTCTTATATAATTTATATCCTTNNNNAAGATTCTAAGAAAAAATTTTTTAATATTTTAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA]
[+] EMBL BI504629 [TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAATATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAACTGCTACTATGAACACGTAAAATTTGAAATATTCTTATATAATTTATATCCTTNNNNAAGATTCTAAGAAAAAATTTTTTAATATTTTAGTGCGTTGCATTTCAAGATATAAATGCTCAAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_588#0 -----GTTTTTAAAT--CTCGGGATAACTTC-----ATGTAAACAGTTACTATATATCAA 48
consensus_588#1 TTTTTTTTATTAAATAATTTATCATAACATTTTCAAATCTTAATCTTTGTGATTTTTGAA 60
** ****** * ***** * ** * ** ** ** * * **
consensus_588#0 TACCAATCTATTAAATCGTTCTTCATGTTGGAAAAAAATGGCGACCGAAGT----GGAAA 104
consensus_588#1 TATCTTGTAATTATATTCCTTTGAATAATAATTCAATATTTTAAACATTTTTTTTGTAAC 120
** * **** ** * * ** * ** ** * * * * **
consensus_588#0 AAGCCCAAGTTGCAGTTCCTACTGGAGATACTATTTTCGGCAAGATACTTCGTAAAGAAA 164
consensus_588#1 TGCTACTATGAACACGTAAAATTTGAAATATTCTTAT--ATAATTTATATCCTTNNNNAA 178
* * ** * * * ** *** * ** * ** ** ** * **
consensus_588#0 TACCTTGTAATTTCATTTATGAAGATGATAAGTGCGTTGCATTTCAAGATATAAATGCTC 224
consensus_588#1 GATTCTAAGAAAAAATTTTTTAATATT-TTAGTGCGTTGCATTTCAAGATATAAATGCTC 237
* * * **** * ** ** * ******************************
consensus_588#0 AAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACAACTTTCAAAAGCCG 284
consensus_588#1 AAGCACCAGTGCATTTTCTAGTAATTCCACGAAAACCAATTTCACA-------------- 283
**********************************************
consensus_588#0 AAGATGCGGACGAAGCTTTGTTGGGCCATTTAATGCTTATTGCCCGTAAAGTGGCGAAGC 344
consensus_588#1 ------------------------------------------------------------
consensus_588#0 AACAAGGCCTCGATAATGGTTTTCGTTTGGTTATCAACGATGGTAAACATGGTGCACAAT 404
consensus_588#1 ------------------------------------------------------------
consensus_588#0 CGGTATATCATTTGCATATACATGTTCTCGGTGGTCGCCAAATGCACTGGCCCCCAGGCT 464
consensus_588#1 ------------------------------------------------------------
consensus_588#0 AAAAAATTCCATTTCATTTAATACAATTCTATACGCAGTTATAAATTTTAAGAAATATCT 524
consensus_588#1 ------------------------------------------------------------
consensus_588#0 TTTGTCAATAATAAAGTATTGAAGAAAATATTNNTGCTTGTAATTAATTATTTTTATTAT 584
consensus_588#1 ------------------------------------------------------------
consensus_588#0 AAAATTAAAAATGTTATAATATTCGAAAAATGTTATTTTGAAACCAAATTAAAAATCTAT 644
consensus_588#1 ------------------------------------------------------------
consensus_588#0 TCTTTTTTATATACTTCAAAAAAGAAATGTATATCATTTTCTTCTTGAATTCCTTGTGGT 704
consensus_588#1 ------------------------------------------------------------
consensus_588#0 AT 706
consensus_588#1 --
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |