These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_59#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1155 fasta sequence [TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATATGCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCCGCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCCACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTTCGGCAATGCCATTTTCGGCACGCATCGATTTTGTCGAGAAGTTTGTATGTGCACCTGCACCATTCCACGAACCATCCATAATTTTCGGGTCTAAACTAACAACCACACCAAACTCCTCAGCTACACGATGAAGAATAAATCTAGCAATCCATAAGTCGTCTCCGGCAGATATTCCGCTACACGGGCCGACTTGGAATTCCCATTGTGAGGGCATAACTTCTGCATTAGTACCGGCAATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCGACAATTTCGCGACCAATTACTTTGTCGGCGCCTACACCACAATAATAAGGTCCTTGCGGCTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAAGGGAAAGTATA-TTCTTGTTCAATTCCGAACCCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGGAAACGTTGGTTGGATGAGGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTG] [-] EMBL BI507959 [TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATATGCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCCGCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCCACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTT ] [-] EMBL BI504682 [TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATATGCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCCGCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCCACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTT ] [+] EMBL BI509050 [ GCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATT TCAGCGCTGGTGTGGc ] [+] EMBL BI946532 [ TATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTTCGGCAATGCCATTTTCGGCACGCATCGATTTTGTCGAGAAGTTTGTATGTGCACCTGCACCATTCCACGAACCATCCATAATTTTCGGGTCTAAACTAACAACCACACCAAACTCCTCAGCTACACGATGAAGAATAAATCTAGCAATCCATAAGTCGTCTCCGGCAGATATTCCGCTACACGGGCCGACTTGGAATTCCCATTGTGAGGGCATAACTTCTGCATTAGTACCGGCAATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCGACAATTTCGCGACCAATTACTTTGTCGGCGCCTACACCACAATAATAAGGTCCTTGCGGCTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAAGGGAAAGTATATTTCTTGTTCAATTCCGAACCCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGGAACCGTTGGTTGGATGAGTTCGGGGTCATGT ] [-] EMBL BI512118 [ ATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCGACAATTTCGCGACCAATTACTTTGTCGGCGCCTACACCACAATAATAAGGTCCTTGCGGCTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAA GGAAAGTATA TTCTTGTTCAATTCCGAA CCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGG AACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTG] consensusID : consensus_59#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 515 fasta sequence [GAAAGTATATTCTTGTTCAATTCCGAACCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTGGAG] [-] EMBL BI515790 [GAAAGTATATTCTTGTTCAATTCCGAACCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTT ] [-] EMBL BI511044 [GAAAGTATATTCTTGTTCAATTCCGAACCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGAT ] [-] EMBL BI512901 [ CCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCANTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTGGAG] [-] EMBL BI516977 [ TGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_59#0 TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATAT 60 consensus_59#1 ------------------------------------------------------------ consensus_59#0 GCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCC 120 consensus_59#1 ------------------------------------------------------------ consensus_59#0 GCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGC 180 consensus_59#1 ------------------------------------------------------------ consensus_59#0 ACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAA 240 consensus_59#1 ------------------------------------------------------------ consensus_59#0 TAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCC 300 consensus_59#1 ------------------------------------------------------------ consensus_59#0 ACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCG 360 consensus_59#1 ------------------------------------------------------------ consensus_59#0 TTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAAT 420 consensus_59#1 ------------------------------------------------------------ consensus_59#0 TTATCAATTGCTTTCTCAATTTCGGCAATGCCATTTTCGGCACGCATCGATTTTGTCGAG 480 consensus_59#1 ------------------------------------------------------------ consensus_59#0 AAGTTTGTATGTGCACCTGCACCATTCCACGAACCATCCATAATTTTCGGGTCTAAACTA 540 consensus_59#1 ------------------------------------------------------------ consensus_59#0 ACAACCACACCAAACTCCTCAGCTACACGATGAAGAATAAATCTAGCAATCCATAAGTCG 600 consensus_59#1 ------------------------------------GAAAGTATATTCTTGTTCAATTCC 24 ** * ** * ** ** consensus_59#0 TCTCCGGCAGATATTCCGCTACACGGGCCGACTTGGAATTCCCATTGTGAGGGCATAACT 660 consensus_59#1 GAACCA-TGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGT--TT 81 ** *** *** ** ** * * * * * * * * * * consensus_59#0 TCTGCATTAGTACCGGCAATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCG 720 consensus_59#1 GTTGGAT--GTAGTCGGGGTCATGTCACTGTAGTAGGTATCA-CATAATACTAA--TTTG 136 ** ** *** * * * * * ** * * * *** * * * * consensus_59#0 ACAATTTCGCGACCAATTACTTTGTCGGCGCCTAC-ACCACAATAATAAGGTCCTTGCGG 779 consensus_59#1 TTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTG 196 * ** * **** ** * ** * * * ** * ** * * ** * consensus_59#0 CTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAAGGGAAAGTAT 839 consensus_59#1 TTTG-------CGCCATCTGCTTGATAAGTTGAACTACCGTC----------GAAGGTCC 239 ** * * ** * * ** ***** ** *** ** consensus_59#0 ATTCTTGTTCAATTCCGAACCCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTA 899 consensus_59#1 ATATTGGT--AAATCTGA-----TGGATGTTTTGGTACGAAATCTACCGT--CCTAGTCT 290 ** * ** ** ** ** ***** ** * * * ** ** * *** * consensus_59#0 CATTTGGGAAACGTTGGTTGGATGAGGTCGGGGTCATGTCACTGTAGTAGGTATCACATA 959 consensus_59#1 TGCTTCGCAAGCTTTCACCGG------------TACCATCAATCCAG-ATGTATTTCGC- 336 ** * ** * ** ** * *** * ** * **** * consensus_59#0 ATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGA 1019 consensus_59#1 ---TTGAATT-TTATTTTCCGGTTGAGGCAGGTCG----AGGTATTTATTTAACAAGG-- 386 * * ** ****** * * ** ***** * * * * **** * consensus_59#0 AAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTG 1079 consensus_59#1 ------TTTTGTCTAAGGCCGC-ATTCGGCGA-TTCCCTCAGTATGACACGTG-ACATTG 437 *** * * * * * * * ** * * * ** * **** consensus_59#0 GTAAATCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGT 1139 consensus_59#1 -TAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGT 496 *** ****************************************************** consensus_59#0 TTGATCGATGGCTGTG--- 1155 consensus_59#1 TTGATCGATGGCTGTGGAG 515 **************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |