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Apis mellifera
cluster # 59 cluster # 59       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_59#0 length = 1155 sequences # 5  
consensus_59#1 length = 515 sequences # 4  

consensusID : consensus_59#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1155
fasta sequence
                              [TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATATGCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCCGCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCCACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTTCGGCAATGCCATTTTCGGCACGCATCGATTTTGTCGAGAAGTTTGTATGTGCACCTGCACCATTCCACGAACCATCCATAATTTTCGGGTCTAAACTAACAACCACACCAAACTCCTCAGCTACACGATGAAGAATAAATCTAGCAATCCATAAGTCGTCTCCGGCAGATATTCCGCTACACGGGCCGACTTGGAATTCCCATTGTGAGGGCATAACTTCTGCATTAGTACCGGCAATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCGACAATTTCGCGACCAATTACTTTGTCGGCGCCTACACCACAATAATAAGGTCCTTGCGGCTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAAGGGAAAGTATA-TTCTTGTTCAATTCCGAACCCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGGAAACGTTGGTTGGATGAGGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTG]

[-] EMBL BI507959             [TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATATGCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCCGCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCCACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BI504682             [TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATATGCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCCGCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCCACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI509050             [                                                                                                                        GCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGCACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAATAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATT       TCAGCGCTGGTGTGGc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI946532             [                                                                                                                                                                                                                                                                                                                              TATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCGTTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAATTTATCAATTGCTTTCTCAATTTCGGCAATGCCATTTTCGGCACGCATCGATTTTGTCGAGAAGTTTGTATGTGCACCTGCACCATTCCACGAACCATCCATAATTTTCGGGTCTAAACTAACAACCACACCAAACTCCTCAGCTACACGATGAAGAATAAATCTAGCAATCCATAAGTCGTCTCCGGCAGATATTCCGCTACACGGGCCGACTTGGAATTCCCATTGTGAGGGCATAACTTCTGCATTAGTACCGGCAATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCGACAATTTCGCGACCAATTACTTTGTCGGCGCCTACACCACAATAATAAGGTCCTTGCGGCTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAAGGGAAAGTATATTTCTTGTTCAATTCCGAACCCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGGAACCGTTGGTTGGATGAGTTCGGGGTCATGT                                                                                                                                                                                                                         ]
[-] EMBL BI512118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCGACAATTTCGCGACCAATTACTTTGTCGGCGCCTACACCACAATAATAAGGTCCTTGCGGCTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAA GGAAAGTATA TTCTTGTTCAATTCCGAA CCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGG  AACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTG]


>consensus_59#0 TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATAT GCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCC GCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGC ACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAA TAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCC ACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCG TTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAAT TTATCAATTGCTTTCTCAATTTCGGCAATGCCATTTTCGGCACGCATCGATTTTGTCGAG AAGTTTGTATGTGCACCTGCACCATTCCACGAACCATCCATAATTTTCGGGTCTAAACTA ACAACCACACCAAACTCCTCAGCTACACGATGAAGAATAAATCTAGCAATCCATAAGTCG TCTCCGGCAGATATTCCGCTACACGGGCCGACTTGGAATTCCCATTGTGAGGGCATAACT TCTGCATTAGTACCGGCAATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCG ACAATTTCGCGACCAATTACTTTGTCGGCGCCTACACCACAATAATAAGGTCCTTGCGGC TTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAAGGGAAAGTATA TTCTTGTTCAATTCCGAACCCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTAC ATTTGGGAAACGTTGGTTGGATGAGGTCGGGGTCATGTCACTGTAGTAGGTATCACATAA TACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAA AATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGG TAAATCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTT TGATCGATGGCTGTG



consensusID : consensus_59#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 515
fasta sequence
                              [GAAAGTATATTCTTGTTCAATTCCGAACCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTGGAG]

[-] EMBL BI515790             [GAAAGTATATTCTTGTTCAATTCCGAACCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTT                  ]
[-] EMBL BI511044             [GAAAGTATATTCTTGTTCAATTCCGAACCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGAT                                                                                                                                                                                                                                                                                                            ]
[-] EMBL BI512901             [                                                     CCATAGCCTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATCACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCANTGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGATCGATGGCTGTGGAG]
[-] EMBL BI516977             [                                                                                                                                                                              TGGACAAAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAAGCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGGCAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAGTATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGTTTGAT              ]


>consensus_59#1 GAAAGTATATTCTTGTTCAATTCCGAACCATGGATCTTCATCTTTTATAGCTTCCATAGC CTGATTACATTTGGAACGTTTGTTGGATGTAGTCGGGGTCATGTCACTGTAGTAGGTATC ACATAATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACA AAGGAAAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCA TATTGGTAAATCTGATGGATGTTTTGGTACGAAATCTACCGTCCTAGTCTTGCTTCGCAA GCTTTCACCGGTACCATCAATCCAGATGTATTTCGCTTGAATTTTATTTTCCGGTTGAGG CAGGTCGAGGTATTTATTTAACAAGGTTTTGTCTAAGGCCGCATTCGGCGATTCCCTCAG TATGACACGTGACATTGTAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGA TGTTCTAGATGATCGTTTGATCGATGGCTGTGGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_59#0      TTTTTTTTCTTTTTTACATTTTTAATTTTAGAAATAATTTTATACATTTTCATAGAATAT 60
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      GCTTCACGAAGGTACGATCACTATTGCACTACAAAATTTTTCGTCCAATTTCTCCTTTCC 120
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      GCTGCCTGTTTGGAAATAACTTGAAGTTTTTTTTTTTATTCATTTAGGACACAAGTGCGC 180
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      ACCAAAGCATGACACACCGAGTAAGGGTCGCAATTACTGCTAGGTCTTCTGTCTTCCAAA 240
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      TAGCCTTTCTTTTCTTCAGCAACTCCACGAGGAATGCGAATACTAACATTACGATTGGCC 300
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      ACACCAGCGCTGAAATCGTATATACTACTGGTCTCGCATTTTCCAGTCAGACGTCGCTCG 360
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      TTGTCTTTTCCTCCGCGTGGATCATACGCTTGAATGTGCCTTAGGTGTTGTTTGCTCAAT 420
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      TTATCAATTGCTTTCTCAATTTCGGCAATGCCATTTTCGGCACGCATCGATTTTGTCGAG 480
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      AAGTTTGTATGTGCACCTGCACCATTCCACGAACCATCCATAATTTTCGGGTCTAAACTA 540
consensus_59#1      ------------------------------------------------------------
                                                                                

consensus_59#0      ACAACCACACCAAACTCCTCAGCTACACGATGAAGAATAAATCTAGCAATCCATAAGTCG 600
consensus_59#1      ------------------------------------GAAAGTATATTCTTGTTCAATTCC 24
                                                          ** * **    *    ** ** 

consensus_59#0      TCTCCGGCAGATATTCCGCTACACGGGCCGACTTGGAATTCCCATTGTGAGGGCATAACT 660
consensus_59#1      GAACCA-TGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTACATTTGGAACGT--TT 81
                       **    *** ***  **      **   * * *  *    *   *  *  * *   *

consensus_59#0      TCTGCATTAGTACCGGCAATTTTTACGCCAGCATAAAGACAAGCTCGATAATGAGCCTCG 720
consensus_59#1      GTTGGAT--GTAGTCGGGGTCATGTCACTGTAGTAGGTATCA-CATAATACTAA--TTTG 136
                      ** **  ***   *   *  *  * *     **   *  * *   *** * *   * *

consensus_59#0      ACAATTTCGCGACCAATTACTTTGTCGGCGCCTAC-ACCACAATAATAAGGTCCTTGCGG 779
consensus_59#1      TTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGAAAATATCGCTG 196
                      * ** * **** **     * ** *     * * **   *  **  *     * ** *

consensus_59#0      CTTAGGGAAACCATTTTTTGGCCAACCAAGTGGTCTACCATCAAAATCAAGGGAAAGTAT 839
consensus_59#1      TTTG-------CGCCATCTGCTTGATAAGTTGAACTACCGTC----------GAAGGTCC 239
                     **        *    * **    *  *  **  ***** **          *** **  

consensus_59#0      ATTCTTGTTCAATTCCGAACCCATGGATCTTCATCTTTTATAGCTTCCATAGCCTGATTA 899
consensus_59#1      ATATTGGT--AAATCTGA-----TGGATGTTTTGGTACGAAATCTACCGT--CCTAGTCT 290
                    **  * **  ** ** **     ***** **    *   * * ** ** *  ***  *  

consensus_59#0      CATTTGGGAAACGTTGGTTGGATGAGGTCGGGGTCATGTCACTGTAGTAGGTATCACATA 959
consensus_59#1      TGCTTCGCAAGCTTTCACCGG------------TACCATCAATCCAG-ATGTATTTCGC- 336
                       ** * ** * **    **            *    *** *  ** * ****  *   

consensus_59#0      ATACTAATTTGTTATTTCCACGACGAAAGGGGTCGTTGTAAATTGCCACTGGACAAAGGA 1019
consensus_59#1      ---TTGAATT-TTATTTTCCGGTTGAGGCAGGTCG----AGGTATTTATTTAACAAGG-- 386
                        * * ** ****** *  *  **    *****    *  *    * *  **** *  

consensus_59#0      AAATATCGCTGTTTGCGCCATCTGCTTGATAAGTTGAACTACCGTCGAAGGTCCATATTG 1079
consensus_59#1      ------TTTTGTCTAAGGCCGC-ATTCGGCGA-TTCCCTCAGTATGACACGTG-ACATTG 437
                             *** *  * *  *   * *   * **     *   *   * **  * ****

consensus_59#0      GTAAATCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGT 1139
consensus_59#1      -TAATGCGCTATTATTGCCGGTCCAGCAATCGTGGAGAGTGTGATGTTCTAGATGATCGT 496
                     ***  ******************************************************

consensus_59#0      TTGATCGATGGCTGTG--- 1155
consensus_59#1      TTGATCGATGGCTGTGGAG 515
                    ****************   




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)