|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence
[ATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGACACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCCCAGGTGTTACGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAATAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATCATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCAGTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAAGGCGAAGCCTGATAAGAGAGAGCAGAGTAACGGCGAGGTTTCCACGGGGGAATCCGGAGAGGAACGATCGACCGCATAAATAAAAAAAATAAACGTTGTCTTTCTAGAGAAATGNNTTTTATACTTATGCATCTTCTAAACTATCACTACGTTTAAATAATATCTCGAGTAA]
[+] EMBL BI516807 [ATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGACACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCCCAGGTGTTACGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAATAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATCATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCAGTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAAGGCGAAGCCTGATAAGAG ]
[+] EMBL BI513431 [ CTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGACACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCTCAGGTGTTACGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAATAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATCATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCAGTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAAGGCGAAGCCTGATAAGAGAGAGCAGAGTAACGGCGAGGTTTCCACGGGGGAATCCGGAGAGGAACGATCGACCGCATAAATAAAAAAAATAAACGTTGTCTTTCTAGAGAAATGNNTTTTATACTTATGCATCTTCTAAACTATCACTACGTTTAAATAATATCTCGAGTAA]
consensusID : consensus_590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[TCTTTCCACCTCTGCTTTTAATATCCAGCTTTTCAGATTTTTAGCCAAGATTTGATATACCACTCAGACAGTTTATGCTTCCCCTTCGCCAAGCTGGGGGTCGGGGGTGGCTTTCGAAATTCCTTGTTTCTGGGAATATTTCCATTATAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGT]
[+] EMBL BI507912 [TCTTTCCACCTCTGCTTTTAATATCCAGCTTTTCAGATTTTTAGCCAAGATTTGATATACCACTCAGACAGTTTATGCTTCCCCTTCGCCAAGCTGGGGGTCGGGGGTGGCTTTCGAAATTCCTTGTTTCTGGGAATATTTCCATTATAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGT]
consensusID : consensus_590#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence
[GAGTTGCAGATGAGCATGAAGTCGGAAATGGAAGTGGCTATGAAACTGTTGGAGAAAGATATTCACGAGAAACAAGACACGATTATATCGTTGCGACGGCAACTCGATGAGATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGTGATCATTAGTATACCTTTTCACCCGTGTTAATCGCGACGAGGGATGCTTTATAGATCGACGTACTTCTCTTCAATGTCTTTTTTTTTTCTTCTTCTCCCTCGTACGAAAGAAGAAA]
[+] EMBL BI504859 [GAGTTGCAGATGAGCATGAAGTCGGAAATGGAAGTGGCTATGAAACTGTTGGAGAAAGATATTCACGAGAAACAAGACACGATTATATCGTTGCGACGGCAACTCGATGAGATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGTGATCATTAGTATACCTTTTCACCCGTGTTAATCGCGACGAGGGATGCTTTATAGATCGACGTACTTCTCTTCAATGTCTTTTTTTTTTCTTCTTCTCCCTCGTACGAAAGAAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_590#0 ------------------------------------------------------------
consensus_590#1 TCTTTCCACCTCTGCTTTTAATATCCAGCTTTTCAGATTTTTAGCCAAGATTTGATATAC 60
consensus_590#2 ------------------------------------------------------------
consensus_590#0 -----------------------------------------------------ATCAAAT 7
consensus_590#1 CACTCAGACAGTTTATGCTTCCCCTTCGCCAAGCTGGGGGTCGGGGGTGGCTTTCGAAAT 120
consensus_590#2 -------------------------------------------------GAGTTGCAGAT 11
* **
consensus_590#0 TAAT-TAACT-TGGAAATGTATAAAAAGCTACAGGAATGT--GAGCACGA-ACTAACGCA 62
consensus_590#1 TCCT-TGTTTCTGGGAATATTTCCA---TTATAGGAATGT--GAGCACGA-ACTAACGCA 173
consensus_590#2 GAGCATGAAGTCGGAAATGGAAGTG--GCTATGAAACTGTTGGAGAAAGATATTCACG-A 68
* ** *** ** * *** *** * ** * * *** *
consensus_590#0 GAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAA 122
consensus_590#1 GAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAA 233
consensus_590#2 GAAACAAGACACGATTATATCGTT----GCGACGGCAACTCGATGAGATCAAAT--TAAT 122
**** ** * * * * * * ** * * * * ** * ** * ** * *
consensus_590#0 TAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGAC 182
consensus_590#1 TAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGT------------------------ 269
consensus_590#2 TAACTTGGAAATGTATAA------AAAGCTACAGGTGATCATTAGT-ATACCTTTTCACC 175
*** * ** * ** ** ** ****
consensus_590#0 ACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCCCAGGTGTTA 242
consensus_590#1 ------------------------------------------------------------
consensus_590#2 CGTGTTAATCGCGACGAGGG--ATGCTTTATAGATCGACGTACTTCTCTTCAATGTCTTT 233
consensus_590#0 CGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAA 302
consensus_590#1 ------------------------------------------------------------
consensus_590#2 TTTTTTTCTTCTTCTCCCTCGTACGAAAGAAGAAA------------------------- 268
consensus_590#0 TAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATC 362
consensus_590#1 ------------------------------------------------------------
consensus_590#2 ------------------------------------------------------------
consensus_590#0 ATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCA 422
consensus_590#1 ------------------------------------------------------------
consensus_590#2 ------------------------------------------------------------
consensus_590#0 GTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAA 482
consensus_590#1 ------------------------------------------------------------
consensus_590#2 ------------------------------------------------------------
consensus_590#0 GGCGAAGCCTGATAAGAGAGAGCAGAGTAACGGCGAGGTTTCCACGGGGGAATCCGGAGA 542
consensus_590#1 ------------------------------------------------------------
consensus_590#2 ------------------------------------------------------------
consensus_590#0 GGAACGATCGACCGCATAAATAAAAAAAATAAACGTTGTCTTTCTAGAGAAATGNNTTTT 602
consensus_590#1 ------------------------------------------------------------
consensus_590#2 ------------------------------------------------------------
consensus_590#0 ATACTTATGCATCTTCTAAACTATCACTACGTTTAAATAATATCTCGAGTAA 654
consensus_590#1 ----------------------------------------------------
consensus_590#2 ----------------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |