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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[ACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTGGAAAAAGAAAATTGGAAATTCGAATGGATTGATTACATTGTTATTCAGAGATCCAGCGATAGATAGGGACGAAACAATATTTGGTAAGAGACGATACGAAACGATAAGCGAGAGATTATTATTACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGGGGTGGCGGTGGAGCGGAAGCCGGTGTGTGACCCCCGAATCCGGGAGCAGAACCTCCACGGCCCAGGATAGCGTAAGCCGATGGTAAATGATGGGCCCCCAATCCATATCCGCCCGGCATACCGCCGAAAAGCGACGAAGCTGCACTGTCGCTCCGAGGCCAATACGCTGCAATCAAAACCGAACCGACCATGTTCAATTACTACGTGTGGCTCGCGCAACGCGGGAGGAACGTTATTATATCGTTCATTCCTCCTTTCCAAAATATAAACTTCGATCGAACTAGTGTAAAATATATATATGATGTTGCAGATTTTCTCGATTGATGATATTCGTGTATTCGACGAGTGTAAATTTGAATAAATTTATGATCTATAAAAATGT]
[+] EMBL BI509771 [ACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTGGAAAAAGAAAATTGGAAATTCGAATGGATTGATTACATTGTTATTCAGAGATCCAGCGATAGATAGGGACGAAACAATATTTGGTAAGAGACGATACGAAACGATAAGCGAGAGATTATTATTACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGGGGTGGCGGTGGAGCGGAAGCCGGTGTGTGACCCCCGAATCCGGGAGCAGAACCTCCACGGCCCAGGATAGCGTAAGCCGATGGTAAATGATGGGCCCCCAATCCATATCCGCCCGGCATACCGCCGAAAAGCGACGAAGCTGCACTGTCGCTCCGAGGCCAATACGCTGCAATCAAAACCGAACCGACCATGTTCAATTACTACGTGTGGCTCGCGCAACGCGGGAGGAACGTTATTATATCGTTCATTCCTCCTTTCCAAAATATAAACTTCGATCGAACTAGTGTAAAATATATATATGATGTTGCAGATTTTCTCGATTGATGATATTCGTGTATTCGACGAGTGTAAATTTGAATAAATTTATGATCTATAAAAATGT]
consensusID : consensus_603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[TCGTATTTTTTCGGTGATTGTTGTTGTCGTTTTTCTTTTTTTTTCCTTTCTCTCTCTTTGTTTGTTTTTGTTGTTCATTCTTAACGATCTCTCACCTGCCCTCTTTCGCAGAACTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGAGAGGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTAGACTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGG]
[+] EMBL BI509674 [TCGTATTTTTTCGGTGATTGTTGTTGTCGTTTTTCTTTTTTTTTCCTTTCTCTCTCTTTGTTTGTTTTTGTTGTTCATTCTTAACGATCTCTCACCTGCCCTCTTTCGCAGAACTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGAGAGGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTAGACTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGG]
consensusID : consensus_603#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence
[CCTCTTTCGCAGAACTGTAGGCGTATCGGCAAGCGTGGAAAAATAATTAATGGGAAACGGTAAGTGCGATGCGGACTGACGGGGTTAGCGTCAGTTAAAAAAATAATGAAAAAAAAAAAAAAANNNNGGAAAGACCATCGATTTAACGAGCATCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGNNNNNNCGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTNNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTNGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGA]
[+] EMBL BI509774 [CCTCTTTCGCAGAACTGTAGGCGTATCGGCAAGCGTGGAAAAATAATTAATGGGAAACGGTAAGTGCGATGCGGACTGACGGGGTTAGCGTCAGTTAAAAAAATAATGAAAAAAAAAAAAAAA ACGGGAAAGACCATCGATTTAACGAGCATCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGAGAAGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTNNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGA]
[+] EMBL BI506062 [ GAACTGTAGGCGTATCGGCAAGCGTGGAAAAATAATTAATGGGAAACGGTAAGTGCGATGCGGACTGACGGGGTTAGCGTCAGTTAAAAAAATAATGAAAAAAAAAAAAAAANNNNGGAAAGACCATCGATTTAACGAGCATCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGNNNNNNCGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTNNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTNGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_603#1 ------------------------------------------------------------
consensus_603#2 -----------------------CCTCTTTCGCAGAACTGTAGGCGTATCGGCAAGCGTG 37
consensus_603#0 ACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCG 60
consensus_603#1 -------------------TCGTATTTTTTCGGTGATTGTTGTTGTCGT-TTTTCTTTTT 40
consensus_603#2 GAAAAATAATTAATGGGAAACG-GTAAGTGCGATGCGGACTGACGGGGT-TAGCGTCAGT 95
consensus_603#0 CTGGATTGATACCTGGAAAAAGAAAATTGGAAATTCGAATGGATTGATTACATTGTTATT 120
* * * * * *
consensus_603#1 TTTTCCTTTCTCTCTCTTT--GTTTGTTTTTGTTGTTCATTCTTAACGATCTCTC-ACCT 97
consensus_603#2 TAAAAAAATAATGAAAAAA--AAAAAAAAANNNNGGAAAGACC-ATCGATTTAACGAGCA 152
consensus_603#0 CAGAGATCCAGCGATAGATAGGGACGAAACAATATTTGGTAAGAGACGATACGAAACGAT 180
****
consensus_603#1 GCCCTCTTTCGCAGAACTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGA 157
consensus_603#2 TCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGA 212
consensus_603#0 AAGCGAGAGATTATTATTACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACC 240
* * * * *** * * * * **** *
consensus_603#1 CGTGCTGTGATGAGAGGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGT 217
consensus_603#2 CGTGCTGTGATGNNNNNNCGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGT 272
consensus_603#0 AAGGCTGCTGTGGGAGTACGGGGGTGGCGGTGGAGCGGAAGCCGGTGTGTGACCCCCGAA 300
**** ** ** * **** * * * ** ***** * *
consensus_603#1 CATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTT 277
consensus_603#2 CATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTT 332
consensus_603#0 TCCGGGAGCAGAACCTCCACGGCCCAGGATAGCGTAAGCCG-ATGGTAAATGATGGGCCC 359
* * * * ** * * *** ** * ** ** * * *
consensus_603#1 AGACTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGG 337
consensus_603#2 NNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGG 392
consensus_603#0 CCAATCCATATCCGCCCGGCATACCGCCGAAAAGCGACGAAGCTGCACTGTCGC-TCCGA 418
* * * ** * * ** * ** *** ** * * * **
consensus_603#1 TGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCT 397
consensus_603#2 TGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCT 452
consensus_603#0 GGCCAATACGCT---GCAATCAAAACCGAACCGACCATGTTCAATTACTACGTGTGGCTC 475
* ** * *** * ** *** * * * ** * *** *
consensus_603#1 -CGCGA----GGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTC 452
consensus_603#2 -CGCGA----GGTNGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTC 507
consensus_603#0 GCGCAACGCGGGAGGAACGTTATTATATCGTTCATTCCTCCTTTCCAAAATATAAACTTC 535
*** * ** * * * ** * **** ** **
consensus_603#1 GCTGGATTGATACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTG 512
consensus_603#2 GCTGGA------------------------------------------------------ 513
consensus_603#0 GATCGAACTAGTGTAAAATATATATATGATGTTGCAGATTTTCTCGATTGATGATATTCG 595
* * **
consensus_603#1 CTGTGGGAGTACGGG---------------------------------- 527
consensus_603#2 -------------------------------------------------
consensus_603#0 TGTATTCGACGAGTGTAAATTTGAATAAATTTATGATCTATAAAAATGT 644
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |