These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence [ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGTAAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGCGCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTTGGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTTGGTGGAAAATCTCCGAATATAATTTTATCAGATGTT] [+] EMBL BI506217 [ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATA ] [+] EMBL BI503955 [ AACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGTAAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGCGCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTTGGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTTGGTGGAAAATCTCCGAATATAATTTTATCAGATGTT] consensusID : consensus_606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTTAGCTTCCTTGATGAAGAACAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAGAATTAGTTTCTGGTGGTACAAGGATTGGTGATAAAGGCTATTTTGTTGCACCTACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGAAGAAATTTTTGGACCAGTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCGTGCTAACAATACTGATTACGGATTAGCAGCAGCAGTATTTACGAAAGATATCGATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCACTGTATGGGTAAATGCGTACAATGTTCTCACAC] [+] EMBL BI508035 [AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTTAGCTTCCTTGATGAAGAACAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAGAATTAGTTTCTGGTGGTACAAGGATTGGTGATAAAGGCTATTTTGTTGCACCTACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGAAGAAATTTTTGGACCAGTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCGTGCTAACAATACTGATTACGGATTAGCAGCAGCAGTATTTACGAAAGATATCGATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCACTGTATGGGTAAATGCGTACAATGTTCTCACAC] consensusID : consensus_606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CAAAAAAATTTTTTCAGATNTAATCTTGGACCAAGCTGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGTTCAAGAACTTTTGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACGTGCTAAATCTAGGGTTGTCNGGCAATCCATTTGATTCAAATGTAGAACAAGGTCCACAGATTGATGAAGNACCAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAG] [+] EMBL BG101583 [CAAAAAAATTTTTTCAGATNTAATCTTGGACCAAGCTGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGTTCAAGAACTTTTGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACGTGCTAAATCTAGGGTTGTCNGGCAATCCATTTGATTCAAATGTAGAACAAGGTCCACAGATTGATGAAGNACCAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_606#0 ----ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAG 56 consensus_606#1 AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAG 60 consensus_606#2 ----------------------CAAAAAAATTTTTTCAGATNTAAT--CTTGGACCAAGC 36 ** ** *** ** * * *** * * ** *** consensus_606#0 TCGGGAAA-AACATTTCCCACGATAAATCCTACAAC-CGGTGAAACGAT--TGCCGAAAT 112 consensus_606#1 TCGGGAAA-AACATTTCCCACGATAAATCCTACAAC-CGGTGAAACGAT--TGCCGAAAT 116 consensus_606#2 TGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGT 96 * *** * * *** * * **** ** ** * * *** * consensus_606#0 ACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAA 172 consensus_606#1 ACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAA 176 consensus_606#2 TCAAGAACTTT-TGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACG 155 ****** ** * ***** * * * * ** * * * ** consensus_606#0 ATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTT 232 consensus_606#1 ATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTT 236 consensus_606#2 TGCTAAATC--TAGGGTTGTCNGGCAATCCATTTGATTCAAATGTA-----GAACAAGGT 208 *** * ** * ** * * * * *** ****** * consensus_606#0 AGCTTCCTTGATGGAACGT-CATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAA-- 289 consensus_606#1 AGCTTCCTTGATGAAGAAC-AAGTAAATAAAA-TTATGTCCATGATTGAATCAGGCAAAA 294 consensus_606#2 CCACAGATTGATGAAGNACCAAGTAAATAAAA-TTATGTCCATGATTGAATCAGGCAAAA 267 ****** * * * * ** * * * * ** *** consensus_606#0 -TGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAG-CCACATTG 347 consensus_606#1 ATGAAGGAGCAGAATTAGTTTCTGGTGG-TACAAGGA--TTGGTGATAAAGGCTATTTTG 351 consensus_606#2 ATGAAGGAGCAG------------------------------------------------ 279 ** * * * consensus_606#0 CGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAA 407 consensus_606#1 TTGCACC-TACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGA--AGAAA 408 consensus_606#2 ------------------------------------------------------------ consensus_606#0 TATTTAGCTTATACTCGCCATGAACCAG---TTGGGGTTTGCGGGCAAATTATTCCGTGG 464 consensus_606#1 TTTTTGGACCA-GTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCG- 466 consensus_606#2 ------------------------------------------------------------ consensus_606#0 AATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTC 524 consensus_606#1 -----TGCTAAC--AATACTGA-TTACGGATTAGCAGCAGCAGTATTTACGAAAGATATC 518 consensus_606#2 ------------------------------------------------------------ consensus_606#0 ATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGT 584 consensus_606#1 GATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCAC-TGTATGGGTAAAT-GCGT 576 consensus_606#2 ------------------------------------------------------------ consensus_606#0 AAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGC 644 consensus_606#1 ACA-ATGTTCTCACAC-------------------------------------------- 591 consensus_606#2 ------------------------------------------------------------ consensus_606#0 GCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTT 704 consensus_606#1 ------------------------------------------------------------ consensus_606#2 ------------------------------------------------------------ consensus_606#0 GGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTT 764 consensus_606#1 ------------------------------------------------------------ consensus_606#2 ------------------------------------------------------------ consensus_606#0 GGTGGAAAATCTCCGAATATAATTTTATCAGATGTT 800 consensus_606#1 ------------------------------------ consensus_606#2 ------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |