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Apis mellifera
cluster # 606 cluster # 606       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_606#0 length = 800 sequences # 2  
consensus_606#1 length = 591 sequences # 1  
consensus_606#2 length = 279 sequences # 1  

consensusID : consensus_606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 800
fasta sequence
                              [ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGTAAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGCGCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTTGGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTTGGTGGAAAATCTCCGAATATAATTTTATCAGATGTT]

[+] EMBL BI506217             [ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATA                                                                                                                                                                                                                                    ]
[+] EMBL BI503955             [                                                                                                                                                                                                                                AACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGTAAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGCGCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTTGGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTTGGTGGAAAATCTCCGAATATAATTTTATCAGATGTT]


>consensus_606#0 ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGG GAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAG GCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGAT CGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTTAGCTTCCT TGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTT ATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAG GATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATA CTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAA TGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTG CAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGTAAAGATGCTGGTTTTC CTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGCGCAGCACTAGTCGCTC ATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTTGGAAAATTGATAAAAC AAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTTGGTGGAAAATCTCCGA ATATAATTTTATCAGATGTT



consensusID : consensus_606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTTAGCTTCCTTGATGAAGAACAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAGAATTAGTTTCTGGTGGTACAAGGATTGGTGATAAAGGCTATTTTGTTGCACCTACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGAAGAAATTTTTGGACCAGTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCGTGCTAACAATACTGATTACGGATTAGCAGCAGCAGTATTTACGAAAGATATCGATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCACTGTATGGGTAAATGCGTACAATGTTCTCACAC]

[+] EMBL BI508035             [AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTTAGCTTCCTTGATGAAGAACAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAGAATTAGTTTCTGGTGGTACAAGGATTGGTGATAAAGGCTATTTTGTTGCACCTACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGAAGAAATTTTTGGACCAGTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCGTGCTAACAATACTGATTACGGATTAGCAGCAGCAGTATTTACGAAAGATATCGATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCACTGTATGGGTAAATGCGTACAATGTTCTCACAC]


>consensus_606#1 AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAG TCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAA GAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTA GGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTTAGCT TCCTTGATGAAGAACAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAG GAGCAGAATTAGTTTCTGGTGGTACAAGGATTGGTGATAAAGGCTATTTTGTTGCACCTA CAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGAAGAAATTTTTGGACCAG TTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCGTGCTAACAATACTG ATTACGGATTAGCAGCAGCAGTATTTACGAAAGATATCGATAAAGCAAATTATATTATAC AAGGACTTCGAGCTGGCACTGTATGGGTAAATGCGTACAATGTTCTCACAC



consensusID : consensus_606#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence
                              [CAAAAAAATTTTTTCAGATNTAATCTTGGACCAAGCTGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGTTCAAGAACTTTTGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACGTGCTAAATCTAGGGTTGTCNGGCAATCCATTTGATTCAAATGTAGAACAAGGTCCACAGATTGATGAAGNACCAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAG]

[+] EMBL BG101583             [CAAAAAAATTTTTTCAGATNTAATCTTGGACCAAGCTGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGTTCAAGAACTTTTGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACGTGCTAAATCTAGGGTTGTCNGGCAATCCATTTGATTCAAATGTAGAACAAGGTCCACAGATTGATGAAGNACCAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAG]


>consensus_606#2 CAAAAAAATTTTTTCAGATNTAATCTTGGACCAAGCTGTAGAAGCAGCNCNNTTTCGGAT TATTTTNACAATATGGGTCAATGGTGNTGCGCCGGTTCAAGAACTTTTGTCGAAGATAGT ATTTATGATGAATTTGTGGACGGAAGNGCAGNACGTGCTAAATCTAGGGTTGTCNGGCAA TCCATTTGATTCAAATGTAGAACAAGGTCCACAGATTGATGAAGNACCAAGTAAATAAAA TTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_606#0      ----ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAG 56
consensus_606#1      AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAG 60
consensus_606#2      ----------------------CAAAAAAATTTTTTCAGATNTAAT--CTTGGACCAAGC 36
                                           **  **  *** ** * *   ***  * * ** ***  

consensus_606#0      TCGGGAAA-AACATTTCCCACGATAAATCCTACAAC-CGGTGAAACGAT--TGCCGAAAT 112
consensus_606#1      TCGGGAAA-AACATTTCCCACGATAAATCCTACAAC-CGGTGAAACGAT--TGCCGAAAT 116
consensus_606#2      TGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGT 96
                     *   ***  * *         *** * *   ****   **   ** * *  ***     *

consensus_606#0      ACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAA 172
consensus_606#1      ACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAA 176
consensus_606#2      TCAAGAACTTT-TGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACG 155
                      ******     **  * *****    *   *  * *  **  * *   *  **      

consensus_606#0      ATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTT 232
consensus_606#1      ATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTT 236
consensus_606#2      TGCTAAATC--TAGGGTTGTCNGGCAATCCATTTGATTCAAATGTA-----GAACAAGGT 208
                           ***   * **    *     ** * * * *      ***      ******  *

consensus_606#0      AGCTTCCTTGATGGAACGT-CATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAA-- 289
consensus_606#1      AGCTTCCTTGATGAAGAAC-AAGTAAATAAAA-TTATGTCCATGATTGAATCAGGCAAAA 294
consensus_606#2      CCACAGATTGATGAAGNACCAAGTAAATAAAA-TTATGTCCATGATTGAATCAGGCAAAA 267
                            ****** *      *   *    *  **  * *  *       * ** ***  

consensus_606#0      -TGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAG-CCACATTG 347
consensus_606#1      ATGAAGGAGCAGAATTAGTTTCTGGTGG-TACAAGGA--TTGGTGATAAAGGCTATTTTG 351
consensus_606#2      ATGAAGGAGCAG------------------------------------------------ 279
                      ** *  * *                                                  

consensus_606#0      CGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAA 407
consensus_606#1      TTGCACC-TACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGA--AGAAA 408
consensus_606#2      ------------------------------------------------------------
                                                                                 

consensus_606#0      TATTTAGCTTATACTCGCCATGAACCAG---TTGGGGTTTGCGGGCAAATTATTCCGTGG 464
consensus_606#1      TTTTTGGACCA-GTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCG- 466
consensus_606#2      ------------------------------------------------------------
                                                                                 

consensus_606#0      AATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTC 524
consensus_606#1      -----TGCTAAC--AATACTGA-TTACGGATTAGCAGCAGCAGTATTTACGAAAGATATC 518
consensus_606#2      ------------------------------------------------------------
                                                                                 

consensus_606#0      ATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGT 584
consensus_606#1      GATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCAC-TGTATGGGTAAAT-GCGT 576
consensus_606#2      ------------------------------------------------------------
                                                                                 

consensus_606#0      AAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGC 644
consensus_606#1      ACA-ATGTTCTCACAC-------------------------------------------- 591
consensus_606#2      ------------------------------------------------------------
                                                                                 

consensus_606#0      GCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTT 704
consensus_606#1      ------------------------------------------------------------
consensus_606#2      ------------------------------------------------------------
                                                                                 

consensus_606#0      GGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTT 764
consensus_606#1      ------------------------------------------------------------
consensus_606#2      ------------------------------------------------------------
                                                                                 

consensus_606#0      GGTGGAAAATCTCCGAATATAATTTTATCAGATGTT 800
consensus_606#1      ------------------------------------
consensus_606#2      ------------------------------------
                                                         




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)