|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 709 fasta sequence
[TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGCATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA-GTTGAAACCTACTAGAAAATTACA-GTCTGTTGCTGAAGAACGTGTTGGTC-GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA-ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT-CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT]
[+] EMBL BG101560 [TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGCATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCANGTTGAAACCTACTAGAAAATTACANGTCTGTTGCTGAAGAACGTGTTGGTCTGTCGTTGTGGTGGTCTACGAGTTTTNAACAGTTATTGGGTAGCTCNAGATTCTTCATATAACATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGATCCCAAAAGTTAAT ]
[-] EMBL BI509704 [ ACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGNNTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA GTTGAAACCTACTAGNNNATTACA GTCTGTTGCTGAAGAACGTGTTGGTC GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTC ]
[+] EMBL BI516576 [ TCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA GTTGAAACCTACTAGAAAATTACA GTCTGTTGCTGAAGAACGTGTTGGTC GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT]
consensusID : consensus_611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence
[TGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCA]
[+] EMBL BI510218 [TGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_611#0 TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGC 60
consensus_611#1 ------------------------------------------------------------
consensus_611#0 ATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCT 120
consensus_611#1 --------------------------------------------------------TGCT 4
****
consensus_611#0 TCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTC 180
consensus_611#1 TCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTC 64
************************************************************
consensus_611#0 TAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAG 240
consensus_611#1 TAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAG---------------- 108
********************************************
consensus_611#0 AATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAA 300
consensus_611#1 AATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAA 168
************************************************************
consensus_611#0 ACCAAAAAGTCATGGTGTTAATCAGTTGAAACCTACTAGAAAATTACAGTCTGTTGCTGA 360
consensus_611#1 ACCAAAAAGTCA------------------------------------------------ 180
************
consensus_611#0 AGAACGTGTTGGTCGTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCA 420
consensus_611#1 ------------------------------------------------------------
consensus_611#0 AGATTCTTCATATAAATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCG 480
consensus_611#1 ------------------------------------------------------------
consensus_611#0 TAATGATCCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGG 540
consensus_611#1 ------------------------------------------------------------
consensus_611#0 AAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAAC 600
consensus_611#1 ------------------------------------------------------------
consensus_611#0 TATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAA 660
consensus_611#1 ------------------------------------------------------------
consensus_611#0 GCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT 709
consensus_611#1 -------------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |