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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 723 fasta sequence
[GATGTTATTTTTGTAATCGAACAACAGATACCGAATGATAAAGTGTACAAGGAAATGATTACACCTTTAATGTCTGAACTTAGGGAGGAATTGAAACAACAAGGAGTAACAGACGTGCACATTGGATTAATCGGGTACAGCGAGATGATGAAATGGCCACAACACCTTTACATTAAATGGCGGATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATAATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCANAGAATGGATGTCGAATTAGGTACTTTCAAATTGACCGATGCTTACGAGGCAGCNATTCGATATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGNNGGAGTGATCGCGAACCCCTGCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTNTTAAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCTGACAGCAAGAAGAAACCACTCACCGGAAGCACCGACATGAAGAGCAATCTCGTACCGGCGATCAAGGACGTCTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGG]
[+] EMBL BG101556 [GATGTTATTTTTGTAATCGAACAACAGATACCGAATGATAAAGTGTACAAGGAAATGATTACACCTTTAATGTCTGAACTTAGGGAGGAATTGAAACAACAAGGAGTAACAGACGTGCACATTGGATTAATCGGGTACAGCGAGATGATGAAATGGCCACAACACCTTTACATTAAATGGCGGATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATAATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCANAAAATGGATGT ]
[+] EMBL BI503517 [ CAGCGAGATGATGAAATGGCCACAACA CTTTACATTAAATGGC GATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATAATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCAGAGAATGGATGTCGAATTAGGTACTTTCAAATTGACCGATGCTTACGAGGCAGCTATTCGATATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGTCGGAGTGATCGCGAACCCCTGCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTCTTAAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCTGACAGCAAGAAGAAACCACTCACCGGAAGCACCGACATGAAGAGCAATCTCGTACCGGCGATCAAGGACGTCTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGG]
[+] EMBL BI504447 [ GAGGCAGCNATTCGATATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGNNGGAGTGATCGCGAACCCCTGCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTNTTAAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCTGACAGCAAGAAGAAACCAC ]
consensusID : consensus_613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGGACGCCAAGTCGAATCAGAAGAAGCAATTCGTCCAAGTGGCAGCGAAGAGGATCGCAGATAGCCTCGTCAACGTAGAATTTGAGAAAGATTGCTCGTGCTTGTACGAATACGGTATGATAGGCCGCTCTAAGTGTAAGATCGTAGGTCGAAAGGAAGTTCCGAGATCCGCGAAAGGAGGAACGAAGGGTTAAAGCGAGACCGTCGCGCATCCCAAAATAATTACTAATTAATTTAGGTGTATTGTGTTTGTTACTTTGTTATACTACGGCAGACGTATTTTCGATATTTGTAAGCAAATTAAGATCATCATACCTCCCAGCGACAGGGAGGGCCACAATTAAGAGTAATCACCGAGTAAAAACCGAGGACTGAAAAAAAAAAACTTCATTTCCTTCCCGTTGAAATTCGCTTCGATGATTTTTTTTTTTTCCTGTAAATAATAATCTTTTATATTTTTTCGCAACAAC]
[+] EMBL BI509512 [CTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGGACGCCAAGTCGAATCAGAAGAAGCAATTCGTCCAAGTGGCAGCGAAGAGGATCGCAGATAGCCTCGTCAACGTAGAATTTGAGAAAGATTGCTCGTGCTTGTACGAATACGGTATGATAGGCCGCTCTAAGTGTAAGATCGTAGGTCGAAAGGAAGTTCCGAGATCCGCGAAAGGAGGAACGAAGGGTTAAAGCGAGACCGTCGCGCATCCCAAAATAATTACTAATTAATTTAGGTGTATTGTGTTTGTTACTTTGTTATACTACGGCAGACGTATTTTCGATATTTGTAAGCAAATTAAGATCATCATACCTCCCAGCGACAGGGAGGGCCACAATTAAGAGTAATCACCGAGTAAAAACCGAGGACTGAAAAAAAAAAACTTCATTTCCTTCCCGTTGAAATTCGCTTCGATGATTTTTTTTTTTTCCTGTAAATAATAATCTTTTATATTTTTTCGCAACAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_613#0 GATGTTATTTTTGTAATCGAACAACAGATACCGAATGATAAAGTGTACAAGGAAATGATT 60
consensus_613#1 ------------------------------------------------------------
consensus_613#0 ACACCTTTAATGTCTGAACTTAGGGAGGAATTGAAACAACAAGGAGTAACAGACGTGCAC 120
consensus_613#1 ------------------------------------------------------------
consensus_613#0 ATTGGATTAATCGGGTACAGCGAGATGATGAAATGGCCACAACACCTTTACATTAAATG- 179
consensus_613#1 -----------------------------------------------CTGCGCTGACTTC 13
* * * * *
consensus_613#0 GCGGATACCAACATAGATGGTGAAGTCAAAAATATGAAGTTTGAGGAAGGAAAACCAATA 239
consensus_613#1 GCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAACAACTTCTTGGACGCCAAGTCGA-- 71
**** * * * ** * *** * ** ** *** * ** * *
consensus_613#0 ATTTCTTACCAGGAAGCGAAAGAAGGCAATACGGAAAAAAAAATTGATTATCTACACCAN 299
consensus_613#1 -------ATCAGAAGAAGCAATTCGTCCAAGTGGCAGCGAAGAG-GATCGCAGATAGCCT 123
* *** * * ** * * * ** * ** * *** * * *
consensus_613#0 AGAATGGATGTCGAATTAGGTACTTTCAAATTGACCGATGCTTACGAGGCAGCNATTCGA 359
consensus_613#1 CG--TCAACGTAGAATTTGAGAA----AGATTGCTCG-TGCTTGTACGAATACGGTATGA 176
* * * ** ***** * * * **** ** ***** * * * **
consensus_613#0 TATCCATTCAGACCTGGTGCAGCGAGGGCTGTGGNNGGAGT----GATC-GCGAACCCCT 414
consensus_613#1 TAGGCCGCTCTAAGTGTAAGATCGTAGGTCGAAAGGAAGTTCCGAGATCCGCGAAAGGAG 236
** * * ** * ** ** * * **** *****
consensus_613#0 GCGAGAAGAGTCCATTCCCCATTTCGTTGCAGCAACTTAGACTTTTACTCGGTN-TTAAA 473
consensus_613#1 GAACGAAGGGTTAAAGC--GAGACCGTCGCGCATCCCAAAATAATTACTAATTAATTTAG 294
* **** ** * * * *** ** * * * ***** * ** *
consensus_613#0 ATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTC 533
consensus_613#1 GTGTATTGTG-TTTGTTACTTTGTTAT-ACTACG----GCAGACGTA-----TTTTCGAT 343
* *** *** **** *** *** ** *** * * ** * ** ***
consensus_613#0 TCGGGCAAGCCTCAGAAAAATATCGTCGCTTACGACCAAGACAACGTGTACACGTTCGCT 593
consensus_613#1 ATTTGTAAGCAAATTAAGATCATCATACCTCCCAGCGACAGGGAGGGCCACA-----ATT 398
* **** ** * *** * ** * * * * * *** *
consensus_613#0 GACAGCAAGAAGAAACCACTCACCGGAAGCACCGACATGAAGAGCAATCTCGTACCGGCG 653
consensus_613#1 AAGAGTAATCACCGAGTAAAAACCG--AGGACTGAAAAAAAAAAACTTCATTTCCTTCCC 456
* ** ** * * * **** ** ** ** * ** * ** * * *
consensus_613#0 ATCAAGGACGTCTGCGCTGACTTCGCGGTTTTCTCTGGCGGTGCGGCGTTCAGCTCGAAC 713
consensus_613#1 GTTGAAATTCGCTTCGATGATTT-----TTTTTTTTTCCTGTA-AATAATAATCTTTTAT 510
* * ** ** *** ** **** * * * ** * * ** *
consensus_613#0 AACTTCTTGG------ 723
consensus_613#1 ATTTTTTCGCAACAAC 526
* ** * *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |