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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence
[TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAAAAAGAAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACTTGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACATATGTTTTCTTACCAGAGTTATAAATCATCCAATTCTTAGCTATGACAACAATTTGTACATCTTTTTGAATACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGCGGAAATGTTCTTATTAA]
[+] EMBL BE844482 [TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACTTGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACATATGTTTTCTTACCAGAGTTATAAATCATCCAATTCTTAGCTATGACAACAATTTGTACATCTTTTTGAATACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGCGGAAATGTTCTTATTAA]
[+] EMBL BI503692 [ AATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAAAAAAA ]
consensusID : consensus_625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTTCAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTGCGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAAAAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAAATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACTTTTTAAAAAAAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAGCGTAGTTGAAAAAAGTTTATGATATTCTGGAATAAAGAGCAAATAATTTGCACCCGTGGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCCCGCGATTAAAACTTAGNAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNNATTTTTTCCAAGAGATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATTATTTATTACCGATCACAAAAT]
[+] EMBL BI508487 [TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTTCAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTGCGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAAAAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAAATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACTTTTTAAAAAAAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAGCGTAGTTGAAAAAAGTTTATGATATTCTGGAATAAAGAGCAAATAATTTGCACCCGTGGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCCCGCGATTAAAACTTAGNAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNNATTTTTTCCAAGAGATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATTATTTATTACCGATCACAAAAT]
consensusID : consensus_625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[GCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATCATCCAATTCTTAGCTATGACAAAAATTTGTACATCTTTTTGACTACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGTGGAAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAAACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATTAGCAACTATAGATAGG]
[+] EMBL BI512150 [GCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATCATCCAATTCTTAGCTATGACAAAAATTTGTACATCTTTTTGACTACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGTGGAAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAAACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATTAGCAACTATAGATAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_625#0 TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAA 60
consensus_625#2 ------------------------------------------------------------
consensus_625#1 ------------------------------------------------------------
consensus_625#0 TTTTAGAAGTAAGCACAATAGCAG--TCGGTGGTGTTATTAAACAGGAGAATCGTGATGT 118
consensus_625#2 ------------------------------------------------------------
consensus_625#1 ----------TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTT 50
consensus_625#0 TGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCAT 178
consensus_625#2 ----------------------------------------------GCTTCACCCTCCAT 14
consensus_625#1 CAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTG 110
* * * *
consensus_625#0 TGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCA--GAT-AGATTCTAA 235
consensus_625#2 TGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCA--GAT-AGATTCTAA 71
consensus_625#1 CGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAA 170
* ** * * * ** ** * * ***** * * ** *** * *** **
consensus_625#0 AGATTCTAGAGATTTACAAGTAAAAGTAGATAATCC---TCAAAAGCATCTTGAAACTC- 291
consensus_625#2 AGATTCTAGAGATTTACAAGTAAAAGTAGATAATCC---TCAAAAGCATCTTGAAACTC- 127
consensus_625#1 AAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAA 230
* *** * * * ** ** ** ** ** * * * *** ** * ** *
consensus_625#0 -TTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAA 350
consensus_625#2 -TTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAA 186
consensus_625#1 ATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACT----TTTTAAAAA 286
** ** * * ** * * ** * * * * * ** *** ** **
consensus_625#0 GGAGAATATATTGTTAGAAGACGTTATA-----ATGATTTTAT--TTGGTTAAGACAAAA 403
consensus_625#2 GGAGAATATATTGTTAGAAGACGTTATA-----ATGATTTTAT--TTGGTTAAGACAAAA 239
consensus_625#1 AAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAG 346
********* * ** * ** *** ** ****** * ***
consensus_625#0 AAAAGAAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACT 463
consensus_625#2 ATTAGTAGATTCATCATCCA-----ATTCT--TAGCTATGACAAAAATTTGTACAT--CT 290
consensus_625#1 CGTAGTTGAAAAA-AGTTTATG-ATATTCTG-GAATAAAGAGCAAATAATTTGCACCCGT 403
** ** * * *** * * * * * ** *
consensus_625#0 TGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACAT 523
consensus_625#2 T------TTTGACTACTAAACCTGCAGAATTTCTCATA-----CATCGTAAAAATCGTGG 339
consensus_625#1 GGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCC------CGCGATTAAAACT-TAG 456
* * * ** ** * * * *
consensus_625#0 ATGTTTTCTTACCAGAGTTATAAATCATC--CAATTCTTAGCTATGACA-ACAATTTGTA 580
consensus_625#2 AAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAA 399
consensus_625#1 NAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNN 516
*** * * * * * * *
consensus_625#0 ----CATCTTTTTGAATACTA--AACCTGCAGAATTTCTCATACATCGTAAAAATCGCGG 634
consensus_625#2 ACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATT 459
consensus_625#1 -----ATTTTTTCCAAGA-GATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATT 570
*** ** * * * * ** * * *
consensus_625#0 AAATGTTCTTATTAA------ 649
consensus_625#2 AGCAACTATAGATAGG----- 475
consensus_625#1 ATTTATTACCGATCACAAAAT 591
* * *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |