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Apis mellifera
cluster # 626 cluster # 626       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_626#0 length = 885 sequences # 3  
consensus_626#1 length = 449 sequences # 1  

consensusID : consensus_626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 885
fasta sequence
                              [TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGTTGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGAAGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGAAGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGAAATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACAGAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAGCTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCTCCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGATCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGT--CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA]

[+] EMBL BI506876             [TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGTTGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGAAGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGAAGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGAAATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACAGAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAGCTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCTCCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGATCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCC                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI510105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATACCGCAAGAAGTATCTTGTCATGT  CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA]
[+] EMBL BI504497             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATACCGCAAGAAGTATCTTGTCATGT  CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA]


>consensus_626#0 TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGT TGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGA AGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGA AGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGA AATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACA GAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAG CTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCT CCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGA TCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGGATCATGTGCAAGTT ATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTT CATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCG TAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAG AATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAAT TCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAGTG AAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA



consensusID : consensus_626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAATTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGATTTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNAATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA]

[+] EMBL BI511602             [GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAATTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGATTTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNAATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA]


>consensus_626#1 GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAGTTATATTT TCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCC TTCATATTGTGTCAATTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAAT AACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGT ATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAA AATATGATTTTTTTTTTCTTAAATAAAAATTTGATTTTATAGTTAGCCGAAATGGTCAAT TTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNAATGTGGATCTATTCTGTTAAGTAAA TTATTACCTCTTTGGAGTCCCATTCTATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_626#0      TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGT 60
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      TGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGA 120
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      AGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGA 180
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      AGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGA 240
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      AATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACA 300
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      GAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAG 360
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      CTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCT 420
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      CCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGA 480
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      TCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGTCG--GATCATGTGCAAG 538
consensus_626#1      --------GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAG 52
                             *************************************  *** *********

consensus_626#0      TTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTAT 598
consensus_626#1      TTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTAT 112
                     ************************************************************

consensus_626#0      TTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAAT 658
consensus_626#1      TTCATGCCTTCATATTGTGTCAA------------------------------------- 135
                     ***********************                                     

consensus_626#0      CGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGA 718
consensus_626#1      ----------------------------------------TTATGGACGATGTATTTGGA 155
                                                             ********************

consensus_626#0      AGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGA 778
consensus_626#1      AGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGA 215
                     ************************************************************

consensus_626#0      ATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAG 838
consensus_626#1      ATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAG 275
                     ***************************************   ******************

consensus_626#0      TGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA------------- 885
consensus_626#1      TGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGAT 335
                     ***********************************************             

consensus_626#0      ------------------------------------------------------------
consensus_626#1      TTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNA 395
                                                                                 

consensus_626#0      ------------------------------------------------------
consensus_626#1      ATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA 449
                                                                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)