These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 885 fasta sequence [TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGTTGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGAAGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGAAGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGAAATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACAGAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAGCTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCTCCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGATCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGT--CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA] [+] EMBL BI506876 [TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGTTGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGAAGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGAAGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGAAATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACAGAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAGCTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCTCCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGATCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCC ] [+] EMBL BI510105 [ ATACCGCAAGAAGTATCTTGTCATGT CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA] [+] EMBL BI504497 [ ATACCGCAAGAAGTATCTTGTCATGT CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA] consensusID : consensus_626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAATTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGATTTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNAATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA] [+] EMBL BI511602 [GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAATTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGATTTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNAATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_626#0 TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGT 60 consensus_626#1 ------------------------------------------------------------ consensus_626#0 TGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGA 120 consensus_626#1 ------------------------------------------------------------ consensus_626#0 AGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGA 180 consensus_626#1 ------------------------------------------------------------ consensus_626#0 AGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGA 240 consensus_626#1 ------------------------------------------------------------ consensus_626#0 AATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACA 300 consensus_626#1 ------------------------------------------------------------ consensus_626#0 GAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAG 360 consensus_626#1 ------------------------------------------------------------ consensus_626#0 CTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCT 420 consensus_626#1 ------------------------------------------------------------ consensus_626#0 CCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGA 480 consensus_626#1 ------------------------------------------------------------ consensus_626#0 TCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGTCG--GATCATGTGCAAG 538 consensus_626#1 --------GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAG 52 ************************************* *** ********* consensus_626#0 TTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTAT 598 consensus_626#1 TTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTAT 112 ************************************************************ consensus_626#0 TTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAAT 658 consensus_626#1 TTCATGCCTTCATATTGTGTCAA------------------------------------- 135 *********************** consensus_626#0 CGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGA 718 consensus_626#1 ----------------------------------------TTATGGACGATGTATTTGGA 155 ******************** consensus_626#0 AGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGA 778 consensus_626#1 AGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGA 215 ************************************************************ consensus_626#0 ATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAG 838 consensus_626#1 ATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAG 275 *************************************** ****************** consensus_626#0 TGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA------------- 885 consensus_626#1 TGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGAT 335 *********************************************** consensus_626#0 ------------------------------------------------------------ consensus_626#1 TTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNA 395 consensus_626#0 ------------------------------------------------------ consensus_626#1 ATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA 449 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |