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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 885 fasta sequence
[TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGTTGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGAAGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGAAGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGAAATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACAGAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAGCTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCTCCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGATCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGT--CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA]
[+] EMBL BI506876 [TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGTTGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGAAGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGAAGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGAAATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACAGAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAGCTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCTCCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGATCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCC ]
[+] EMBL BI510105 [ ATACCGCAAGAAGTATCTTGTCATGT CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA]
[+] EMBL BI504497 [ ATACCGCAAGAAGTATCTTGTCATGT CGGATCATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAATCGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA]
consensusID : consensus_626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAATTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGATTTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNAATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA]
[+] EMBL BI511602 [GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAGTTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTATTTCATGCCTTCATATTGTGTCAATTATGGACGATGTATTTGGAAGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGAATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAGTGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGATTTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNAATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_626#0 TCTTGCTCTTGCATTTCGTACTTCAGGATATCGGCGGCTCGTTACCTAACACGATCGCGT 60
consensus_626#1 ------------------------------------------------------------
consensus_626#0 TGGAGAATATCCAAACAGACATATCACCGATTTATAATACAAACGCTTCCGAGTCCCTGA 120
consensus_626#1 ------------------------------------------------------------
consensus_626#0 AGAATCAACTGTCGGACGTGCTCGATTTCTTGGCAGATTTTCACACTTTGAGTAAAGTGA 180
consensus_626#1 ------------------------------------------------------------
consensus_626#0 AGAGCTATAGTAAAGGAATGCAGGCTGGCCTGAACGAGGATACTTTAGGTGGTATCCTGA 240
consensus_626#1 ------------------------------------------------------------
consensus_626#0 AATGTGGTCTCGCACAATTTGTAGCTCTAGAAATCACCAGAGGCAACAATAGAGAGAACA 300
consensus_626#1 ------------------------------------------------------------
consensus_626#0 GAGCTGTAGCTCGCTATCTTCCTTGGCTCTATAGCGCTCCCTCTATGATACAACAAGGAG 360
consensus_626#1 ------------------------------------------------------------
consensus_626#0 CTCGAGAATATGTGGATTGTATAGGTCATATCAGATTACTATCATGGTTGCTGTTGGGCT 420
consensus_626#1 ------------------------------------------------------------
consensus_626#0 CCCTTACGCACACTTCGATGTACGCTGGCAATAATACGCATAACAACCATGGCCAGTCGA 480
consensus_626#1 ------------------------------------------------------------
consensus_626#0 TCCCATCTGCACAACCAATACCGCAAGAAGTATCTTGTCATGTCG--GATCATGTGCAAG 538
consensus_626#1 --------GCACAACCAATACCGCAAGAAGTATCTTGTCATGTCGCGGATTATGTGCAAG 52
************************************* *** *********
consensus_626#0 TTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTAT 598
consensus_626#1 TTATATTTTCCGGGTTCCCGGAACAATCTAAAGCATCAGTCCTACACATGTCCTCATTAT 112
************************************************************
consensus_626#0 TTCATGCCTTCATATTGTGTCAAGTATGTATATATATATATATTAGTGGAATACTTGAAT 658
consensus_626#1 TTCATGCCTTCATATTGTGTCAA------------------------------------- 135
***********************
consensus_626#0 CGTAAATACGTAATTCGTAAGCATTATTGTTCATATTCAGTTATGGACGATGTATTTGGA 718
consensus_626#1 ----------------------------------------TTATGGACGATGTATTTGGA 155
********************
consensus_626#0 AGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGA 778
consensus_626#1 AGAATTATCAAAGAATCCATCGAATAACGAAGGTCACATTACAATGAATATTTTATTGGA 215
************************************************************
consensus_626#0 ATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTNNNATACTCGAAAGTCGTAAG 838
consensus_626#1 ATTCTGGGGCAAGATAACGCCTTGTATATTACAATTAGTTGAATACTCGAAAGTCGTAAG 275
*************************************** ******************
consensus_626#0 TGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAA------------- 885
consensus_626#1 TGAAAAAATCATGAAAATATTAAAAAATATGATTTTTTTTTTCTTAAATAAAAATTTGAT 335
***********************************************
consensus_626#0 ------------------------------------------------------------
consensus_626#1 TTTATAGTTAGCCGAAATGGTCAATTTGCATTTCTTAAGCTTACTCGAAGCTCTTCTNNA 395
consensus_626#0 ------------------------------------------------------
consensus_626#1 ATGTGGATCTATTCTGTTAAGTAAATTATTACCTCTTTGGAGTCCCATTCTATA 449
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |