These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 848 fasta sequence [GGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAGAAAGAAAGAAAGAAAGAGAGGAAGGACGGAGAAACGAACGAACGAACGAAAAAAAGAGGAAATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGGTCGCTCAATTTATGTTAATAACGGCCCAAAAAAGACGTGTTTTTTAATTATATATAAATATATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAATGAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAAAAAAAAAAAAATGAAAAAATGTACGTAACACTATTCACATGAACATATATATGAACGGTTTATGTTTCTCGCGCCACACATGCCACATGTCAGCTCCATGGCTAAAAGTGA] [+] EMBL BI513121 [GGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAACGAAGAAACGAACGAACGAACGAAAAAAAGAGGAAATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGG ] [-] EMBL BE844278 [ AGAAGAAGGACGGAGAAACGAACGAACGAACG AAAAAAGAGG AATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGGTCGCTCAATTTATGTTAATAACGGCCC AAAAAGACGTGTTTTTTAATTATATATAAATATATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAATGAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAAAAAAAAAAAAATGAAAAAATGTACGTAACACTATTCACATGAACATATATATGAACGGTTTATGTTTCTCGCGCCACACATGCCACATGTCAGCTCCATGGCTAAAAGTGA] [+] EMBL BI512417 [ AGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGGTCGCTCAATTTATGTTAATAACGGCCCAAAAAAGACGTGTTTTTTAATTATATATAAATATATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAATGAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAAAAA ] consensusID : consensus_638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TCGTGCGAATGCATTCGTTTGAGTGCCGAATGAAAAAAACGGGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAATAAGTGAAAACGAAGGAGAAAACGAAGGTGAAAGGGTGTACAAGTGTGCTTAGGTATGCGCGAGAGAATGCACGAGAGTATAGAGGTTAAACGAGGGAGAAGATTCACACGCTAAATTAATTGCACGGGGGAAGAGGGAGATAAATAGAACGAACGGCGATCGGCGCGACGGTGAACGCCGGTGATTCAAAGGGACGACGTTTCACGGTTTCCCGCGAAAATTTTAGGGTGGAACGTTGTTGGATTCGTGTGGATT] [+] EMBL BI511017 [TCGTGCGAATGCATTCGTTTGAGTGCCGAATGAAAAAAACGGGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAATAAGTGAAAACGAAGGAGAAAACGAAGGTGAAAGGGTGTACAAGTGTGCTTAGGTATGCGCGAGAGAATGCACGAGAGTATAGAGGTTAAACGAGGGAGAAGATTCACACGCTAAATTAATTGCACGGGGGAAGAGGGAGATAAATAGAACGAACGGCGATCGGCGCGACGGTGAACGCCGGTGATTCAAAGGGACGACGTTTCACGGTTTCCCGCGAAAATTTTAGGGTGGAACGTTGTTGGATTCGTGTGGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_638#0 -----------------------------------------GGAATGAATGGGGTTTGAG 19 consensus_638#1 TCGTGCGAATGCATTCGTTTGAGTGCCGAATGAAAAAAACGGGAATGAATGGGGTTTGAG 60 ******************* consensus_638#0 TGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACG 79 consensus_638#1 TGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACG 120 ************************************************************ consensus_638#0 CGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAA 139 consensus_638#1 CGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAA 180 ************************************************************ consensus_638#0 GAAAGAAAGAAAGAAAGAGAGGA--AGGACGGAGAAACGAACGAACGAACGAAAAAAAGA 197 consensus_638#1 ATAAGTGAAAACGAAGGAGAAAACGAAGGTGAAAGGGTGTACAAGTGTGCTTAGGTATGC 240 *** * ** *** **** * * * * * * ** * * * * * * consensus_638#0 GGAAATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCAC 257 consensus_638#1 GCGAGAG---AATGCACGAGAGTATAGAGGTTAAACGAGGGAGAAG--------ATTCAC 289 * * * * ** * * * ** * *** ** * *** ***** consensus_638#0 GGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCG 317 consensus_638#1 ----ACGCTAAATTA-ATTGCACGGGGGAAGAGGGAGATAA-ATAGAACGAAC---GGCG 340 *** * *** * ** * ** * ** * * * ** * * ** *** consensus_638#0 TTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGT 377 consensus_638#1 ATCGGCGCGACGGTGAACGCCGGTGATTCAAAGGGACGACGTTTCACG-GTTTCCCGCGA 399 ** *** * * ** * * ** ** ** ** * * consensus_638#0 GGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGA 437 consensus_638#1 AAATTTTAGGGTG---GAACGTTGTTGGATTCGTGTGGATT------------------- 437 * ***** * *** * ** * * * * * consensus_638#0 CGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATC 497 consensus_638#1 ------------------------------------------------------------ consensus_638#0 CTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGG 557 consensus_638#1 ------------------------------------------------------------ consensus_638#0 TCGCTCAATTTATGTTAATAACGGCCCAAAAAAGACGTGTTTTTTAATTATATATAAATA 617 consensus_638#1 ------------------------------------------------------------ consensus_638#0 TATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAAT 677 consensus_638#1 ------------------------------------------------------------ consensus_638#0 GAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAA 737 consensus_638#1 ------------------------------------------------------------ consensus_638#0 AAAAAAAAAAATGAAAAAATGTACGTAACACTATTCACATGAACATATATATGAACGGTT 797 consensus_638#1 ------------------------------------------------------------ consensus_638#0 TATGTTTCTCGCGCCACACATGCCACATGTCAGCTCCATGGCTAAAAGTGA 848 consensus_638#1 --------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |