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Apis mellifera
cluster # 640 cluster # 640       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_640#0 length = 709 sequences # 1  
 consensus_640#1 length = 540 sequences # 3  
consensusID : consensus_640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 709
fasta sequence 
                              [TGGCGGCGCGGGAATTCGATTAGCGTGGTCGCGGCGAGGTATTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTCGCGGCTTCGTTGCTCACCGCGCATTGGTACAACCCCCTGTCCTGCTCTTGTATCCTGTCTATCGTCAAGTTGCCACCGATTATAATCGTTCTGTTGGTCAACGGTATTGGCGAGCCGTCCTTGTACCAAACGATCGACGGCCTGTGAGATTGATCTCCATCCTTCGCGTCGCAGGGTATCTCCAAATTCTCTCCCAATTTCCTTATGTACAAGTGTTGGGGGGTGACGGTGAACACGGGCGGCCTCTGCACGATCACGGTGATCGACGGACTGGGTCCCTCGGTCCCAAGCTCGTTGTACGGCGTGCAAGTGTAACTTCCCGAGTGGGTTTCGTCCACCTTGCTGAAGTAGAGGGAGCCGTTCCTCCTGTAGAACACACCCTGAAAGTTGTACCTGCCCGGNGCGGCGCTCGAATCAATAGTGAATT]

[+] EMBL AB078173             [TGGCGGCGCGGGAATTCGATTAGCGTGGTCGCGGCGAGGTATTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTCGCGGCTTCGTTGCTCACCGCGCATTGGTACAACCCCCTGTCCTGCTCTTGTATCCTGTCTATCGTCAAGTTGCCACCGATTATAATCGTTCTGTTGGTCAACGGTATTGGCGAGCCGTCCTTGTACCAAACGATCGACGGCCTGTGAGATTGATCTCCATCCTTCGCGTCGCAGGGTATCTCCAAATTCTCTCCCAATTTCCTTATGTACAAGTGTTGGGGGGTGACGGTGAACACGGGCGGCCTCTGCACGATCACGGTGATCGACGGACTGGGTCCCTCGGTCCCAAGCTCGTTGTACGGCGTGCAAGTGTAACTTCCCGAGTGGGTTTCGTCCACCTTGCTGAAGTAGAGGGAGCCGTTCCTCCTGTAGAACACACCCTGAAAGTTGTACCTGCCCGGNGCGGCGCTCGAATCAATAGTGAATT]




>consensus_640#0
TGGCGGCGCGGGAATTCGATTAGCGTGGTCGCGGCGAGGTATTCCCGCCCCGGATTCAGA
TTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTC
GTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACC
CAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGA
GGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTCGCGGCTTCGTTGCTCACC
GCGCATTGGTACAACCCCCTGTCCTGCTCTTGTATCCTGTCTATCGTCAAGTTGCCACCG
ATTATAATCGTTCTGTTGGTCAACGGTATTGGCGAGCCGTCCTTGTACCAAACGATCGAC
GGCCTGTGAGATTGATCTCCATCCTTCGCGTCGCAGGGTATCTCCAAATTCTCTCCCAAT
TTCCTTATGTACAAGTGTTGGGGGGTGACGGTGAACACGGGCGGCCTCTGCACGATCACG
GTGATCGACGGACTGGGTCCCTCGGTCCCAAGCTCGTTGTACGGCGTGCAAGTGTAACTT
CCCGAGTGGGTTTCGTCCACCTTGCTGAAGTAGAGGGAGCCGTTCCTCCTGTAGAACACA
CCCTGAAAGTTGTACCTGCCCGGNGCGGCGCTCGAATCAATAGTGAATT

consensusID : consensus_640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 540
fasta sequence 
                              [TAGTAAGTGTCGGTCGTTTCCGCTCTGCCGTACAATTGCTCGGACGGCCCACGGAACCATCTAACGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGTCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTC]

[-] EMBL BI514469             [TAGTAAGTGTCGGTCGTTTCCGCTCTGCCGTACAATTGCTCGGACGGCCCACGGAACCATCTAACGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGTCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCG                 ]
[-] EMBL BI514022             [                                                            CTAACGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGTCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTC]
[-] EMBL BI514118             [                                                                                          CCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGNCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTC]




>consensus_640#1
TAGTAAGTGTCGGTCGTTTCCGCTCTGCCGTACAATTGCTCGGACGGCCCACGGAACCAT
CTAACGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAGA
TAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGTCTGGA
GGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGC
AACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTAC
TCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTC
ATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGT
CTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAG
TTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_640#0      TGGCGGCGCGGGAATTCGATTAGCGTGGTCGCGGCGAGGTATTCCCGCCCCGGATTCAGA 60
consensus_640#1      ------------------------------------------------------------
                                                                                 

consensus_640#0      TTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTC 120
consensus_640#1      ------------------------------------------------------TAGTAA 6
                                                                           * *   

consensus_640#0      GTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACC 180
consensus_640#1      GTGTCGGTCG-TTTCCGCTCTGCCGTACAATTGCTCGGACGGCCCACGGAACC----ATC 61
                     ******** *   *   *    ***   * *   **    * * **** * **    * *

consensus_640#0      CAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGA 240
consensus_640#1      TAA--CGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAG 119
                      *   *  ***   * *    ***** **    *    ** *  *  *        **  

consensus_640#0      GGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTCGCGGCTTCGTTGCTCACC 300
consensus_640#1      ATAGCCTT--GCACGGTCGCTTGCACTCTCACGTTCAACGGCG-GGCCCATCCGATCGTC 176
                         * **   ***  *   ** *     * **  ** ** ** ***      * **  *

consensus_640#0      GCGCATTGGTACAACCCCCTGTCCTGCTCTTGTATCCTGTCTATCGTCAAGTTGCCACCG 360
consensus_640#1      -TGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGA--ATTGGGCTG--GGTG 231
                       * *    * * *  * * * *      ** *   *   * *   *   * **     *

consensus_640#0      ATTATAATCGTTCTGTTGGTCAACGGTATTGGCGAGCCGTCCTTGTACCAAACGATCGAC 420
consensus_640#1      AATATACGCAACGTTTTACTGAACA-TCCCGTC--CCCGTGTTTGTCCTGGCTAAGCA-- 286
                     * ****  *    * **  * ***  *   * *   ****  **** *      * *   

consensus_640#0      GGCCTGTGAGATTGATCTCCATCCTTCGCGTCGCAGGGTATCTCCAAATTCTCTCCCAAT 480
consensus_640#1      ---CCATGAACTCGTACTCCCGCCCCGGATT--CAGATTGTTTATCGTCGCCTCGGTGAT 341
                        *  ***  * *  ****  **   *  *  ***  * * *       *       **

consensus_640#0      TTCCTTATGTACAAGTGTTGGGGGGTGAC----GGTGAACACGGGCGGCCTCTGCACGAT 536
consensus_640#1      TTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGAC 401
                     **   *    *  *   *    *     *    ***     ***  ***** * *  ** 

consensus_640#0      CACGGTGATCGACGGACTGGGTCCCTCGGTCCCAAGCTCGTTGTACGGCGTGCAAGTGTA 596
consensus_640#1      CG-AGTATTCCATC--TTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTT 458
                     *   **  ** *     ****** * **   **  ** *   *  *  ****  ** ** 

consensus_640#0      ACTTCCCGAGTGGGTTTCGTCCACCTTGCTGAAGTAGAGGGAGCCGTTCCTCCTGTAGAA 656
consensus_640#1      GTTGCTGCTGTTGG---CGCTCAAGTTGT--------ACGGCGCCCTCGGAGGGACGTTC 507
                       * *    ** **   **  **  ***         * ** *** *             

consensus_640#0      CACACCCTGAAAGTTGTACCTGCCCGGNGCGGCGCTCGAATCAATAGTGAATT 709
consensus_640#1      AACACCATTAATTCCGTGTCCGCGACCACCGTC-------------------- 540
                      ***** * **    **  * **      ** *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)